PPP1R37

protein phosphatase 1 regulatory subunit 37, the group of Protein phosphatase 1 regulatory subunits

Basic information

Region (hg38): 19:45091396-45148077

Previous symbols: [ "LRRC68" ]

Links

ENSG00000104866 ∙ NCBI:284352 ∙ ∙ HGNC:27607 ∙ Uniprot:O75864 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the PPP1R37 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the PPP1R37 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			56	2		58
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	56	2	1

Variants in PPP1R37

This is a list of pathogenic ClinVar variants found in the PPP1R37 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-45093360-C-T		not specified	Uncertain significance (Oct 29, 2021)
19-45093416-G-T		not specified	Uncertain significance (Jun 21, 2023)
19-45093471-C-G		not specified	Uncertain significance (Apr 22, 2022)
19-45138552-A-C		not specified	Uncertain significance (Mar 29, 2022)
19-45138561-T-A		not specified	Uncertain significance (Oct 27, 2022)
19-45138588-C-G		not specified	Uncertain significance (Dec 01, 2022)
19-45140251-G-A		not specified	Uncertain significance (Jan 04, 2022)
19-45140263-G-A		not specified	Uncertain significance (Oct 26, 2022)
19-45140521-A-G		not specified	Uncertain significance (Oct 30, 2023)
19-45140527-C-T		not specified	Uncertain significance (Jun 10, 2024)
19-45141381-C-G		not specified	Uncertain significance (Jul 20, 2022)
19-45142089-G-A		not specified	Uncertain significance (May 23, 2023)
19-45142095-C-T		not specified	Uncertain significance (May 11, 2022)
19-45142116-C-T		not specified	Uncertain significance (May 22, 2023)
19-45142124-G-T		not specified	Uncertain significance (Mar 18, 2024)
19-45142130-C-T		not specified	Uncertain significance (Oct 26, 2022)
19-45142133-G-A		not specified	Uncertain significance (Feb 28, 2024)
19-45142187-T-A		not specified	Uncertain significance (Oct 27, 2022)
19-45142194-G-A		not specified	Uncertain significance (Apr 14, 2022)
19-45142365-G-A		not specified	Uncertain significance (Jun 11, 2021)
19-45142435-G-A		not specified	Uncertain significance (Apr 08, 2024)
19-45143555-G-C		not specified	Uncertain significance (Dec 20, 2022)
19-45143612-G-T		not specified	Uncertain significance (Dec 17, 2023)
19-45144854-C-T		not specified	Uncertain significance (Feb 27, 2023)
19-45144896-C-G		not specified	Uncertain significance (Nov 10, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
PPP1R37	protein_coding	protein_coding	ENST00000221462	12	56682

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.994	0.00552	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.27	278	407	0.683	0.0000270	4393
Missense in Polyphen		45	98.668	0.45608		1058
Synonymous	1.16	178	199	0.896	0.0000152	1460
Loss of Function	4.19	2	24.3	0.0824	0.00000104	316

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Inhibits phosphatase activity of protein phosphatase 1 (PP1) complexes. {ECO:0000269|PubMed:19389623}.

Recessive Scores

• pRec: 0.0951

Haploinsufficiency Scores

• ghis: 0.559

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Ppp1r37

Gene ontology

• Biological process: negative regulation of phosphatase activity;negative regulation of phosphoprotein phosphatase activity
• Molecular function: protein phosphatase inhibitor activity;protein binding