PROB1

proline rich basic protein 1

Basic information

Region (hg38): 5:139390592-139395104

Previous symbols: [ "C5orf65" ]

Links

ENSG00000228672 ∙ NCBI:389333 ∙ ∙ HGNC:41906 ∙ Uniprot:E7EW31 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the PROB1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the PROB1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1	1	2
missense			64	4	6	74
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	64	5	7

Variants in PROB1

This is a list of pathogenic ClinVar variants found in the PROB1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
5-139392081-T-G		not specified	Uncertain significance (Sep 14, 2022)
5-139392207-G-C		not specified	Uncertain significance (Jun 06, 2023)
5-139392215-G-T		not specified	Uncertain significance (Jan 23, 2024)
5-139392293-T-C		not specified	Uncertain significance (Jun 07, 2024)
5-139392351-C-T		not specified	Uncertain significance (Aug 16, 2021)
5-139392455-G-C		not specified	Uncertain significance (Oct 26, 2021)
5-139392497-G-C		not specified	Uncertain significance (Jan 19, 2024)
5-139392528-G-T		not specified	Uncertain significance (Oct 20, 2023)
5-139392587-T-G		not specified	Uncertain significance (Apr 15, 2024)
5-139392618-G-A		not specified	Uncertain significance (Dec 21, 2023)
5-139392660-C-T		not specified	Uncertain significance (Dec 07, 2021)
5-139392684-G-T		not specified	Uncertain significance (May 24, 2024)
5-139392698-C-G		not specified	Uncertain significance (Feb 15, 2023)
5-139392711-C-A		not specified	Uncertain significance (Aug 09, 2021)
5-139392718-G-A			Benign (Jun 18, 2018)
5-139392737-G-A		not specified	Uncertain significance (Nov 20, 2023)
5-139392741-C-T		not specified	Uncertain significance (Jan 27, 2022)
5-139392749-G-A		not specified	Uncertain significance (Apr 10, 2023)
5-139392884-A-G		not specified	Uncertain significance (May 15, 2023)
5-139392894-G-T		not specified	Uncertain significance (Jan 03, 2024)
5-139392903-G-A		not specified	Uncertain significance (May 01, 2024)
5-139392926-C-T		not specified	Uncertain significance (Mar 07, 2023)
5-139392998-T-A		not specified	Uncertain significance (Dec 28, 2023)
5-139393002-G-A		not specified	Uncertain significance (Apr 24, 2024)
5-139393016-G-T		not specified	Uncertain significance (Jan 10, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
PROB1	protein_coding	protein_coding	ENST00000434752	1	3251

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00549	0.990	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.57	342	434	0.788	0.0000227	6221
Missense in Polyphen		102	127.48	0.80013		2034
Synonymous	3.22	147	206	0.714	0.0000116	2425
Loss of Function	2.48	7	18.5	0.378	8.12e-7	235

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	High	Medium	High
Cancer	High	High	High

Mouse Genome Informatics

• Gene name: Prob1