PROKR1

prokineticin receptor 1, the group of Prokineticin receptors

Basic information

Region (hg38): 2:68643579-68658251

Previous symbols: [ "GPR73" ]

Links

ENSG00000169618 ∙ NCBI:10887 ∙ OMIM:607122 ∙ HGNC:4524 ∙ Uniprot:Q8TCW9 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the PROKR1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the PROKR1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			34	4		38
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	34	4	0

Variants in PROKR1

This is a list of pathogenic ClinVar variants found in the PROKR1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-68645908-T-G		not specified	Likely benign (Oct 26, 2022)
2-68645934-G-A		not specified	Uncertain significance (Nov 21, 2022)
2-68646006-A-C		not specified	Uncertain significance (Aug 02, 2023)
2-68646023-G-A		not specified	Uncertain significance (Oct 20, 2024)
2-68646060-A-C		not specified	Uncertain significance (Dec 20, 2023)
2-68646102-G-A		not specified	Uncertain significance (Jul 16, 2021)
2-68646176-G-A		not specified	Conflicting classifications of pathogenicity (Oct 19, 2024)
2-68646179-A-G		not specified	Uncertain significance (Oct 21, 2024)
2-68646189-A-G		not specified	Uncertain significance (Sep 26, 2022)
2-68646198-G-T		not specified	Uncertain significance (Sep 20, 2024)
2-68646224-G-A		not specified	Likely benign (Aug 13, 2021)
2-68646234-C-A		not specified	Uncertain significance (Jan 09, 2024)
2-68646251-C-T		not specified	Uncertain significance (Nov 29, 2023)
2-68646252-G-A		not specified	Uncertain significance (Dec 18, 2023)
2-68646293-A-G		not specified	Uncertain significance (Jun 12, 2023)
2-68654957-C-T		not specified	Uncertain significance (Aug 19, 2024)
2-68654986-G-A		not specified	Uncertain significance (Feb 06, 2024)
2-68654999-C-A		not specified	Uncertain significance (Dec 09, 2024)
2-68655026-G-C		not specified	Uncertain significance (Jun 17, 2022)
2-68655073-C-A		not specified	Likely benign (Jun 22, 2023)
2-68655083-A-C		Long QT syndrome	Likely benign (-)
2-68655149-A-G		not specified	Uncertain significance (May 03, 2023)
2-68655166-G-A		not specified	Uncertain significance (Dec 13, 2023)
2-68655212-G-T		not specified	Uncertain significance (Oct 04, 2024)
2-68655266-C-G		not specified	Uncertain significance (Aug 08, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
PROKR1	protein_coding	protein_coding	ENST00000303786	2	11988

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.16e-7	0.109	125700	0	48	125748	0.000191

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.341	248	233	1.06	0.0000156	2598
Missense in Polyphen		65	66.547	0.97675		680
Synonymous	0.695	90	98.8	0.911	0.00000732	798
Loss of Function	-0.346	10	8.89	1.13	3.93e-7	113

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000467	0.000467
Ashkenazi Jewish	0.00	0.00
East Asian	0.000217	0.000217
Finnish	0.00	0.00
European (Non-Finnish)	0.000230	0.000229
Middle Eastern	0.000217	0.000217
South Asian	0.0000653	0.0000653
Other	0.000165	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Receptor for prokineticin 1. Exclusively coupled to the G(q) subclass of heteromeric G proteins. Activation leads to mobilization of calcium, stimulation of phosphoinositide turnover and activation of p44/p42 mitogen-activated protein kinase. May play a role during early pregnancy. {ECO:0000269|PubMed:18339712}.
• Pathway: Signaling by GPCR;Signal Transduction;Peptide ligand-binding receptors;Class A/1 (Rhodopsin-like receptors);GPCR ligand binding;G alpha (q) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.130

Intolerance Scores

• loftool: 0.691
• rvis_EVS: -0.49
• rvis_percentile_EVS: 22.65

Haploinsufficiency Scores

• pHI: 0.120
• hipred: N
• hipred_score: 0.338
• ghis: 0.429

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.312

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Prokr1
• Phenotype: growth/size/body region phenotype; integument phenotype (the observable morphological and physiological characteristics of the skin and its associated structures, such as the hair, nails, sweat glands, sebaceous glands and other secretory glands that are manifested through development and lifespan); homeostasis/metabolism phenotype; behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); pigmentation phenotype; cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan); normal phenotype; vision/eye phenotype; skeleton phenotype

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;neuropeptide signaling pathway;circadian rhythm
• Cellular component: plasma membrane;integral component of plasma membrane
• Molecular function: G protein-coupled receptor activity;neuropeptide Y receptor activity