PRR11

proline rich 11

Basic information

Region (hg38): 17:59155732-59206709

Links

ENSG00000068489 ∙ NCBI:55771 ∙ OMIM:615920 ∙ HGNC:25619 ∙ Uniprot:Q96HE9 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the PRR11 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the PRR11 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			14	3		17
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	14	3	0

Variants in PRR11

This is a list of pathogenic ClinVar variants found in the PRR11 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
17-59169761-G-C		not specified	Uncertain significance (Mar 25, 2024)
17-59169772-G-A			Likely benign (Apr 01, 2023)
17-59169798-G-A		not specified	Likely benign (Jan 09, 2024)
17-59169823-C-G		not specified	Uncertain significance (Nov 11, 2024)
17-59185058-G-A		not specified	Uncertain significance (Nov 09, 2024)
17-59185089-G-T		not specified	Uncertain significance (Jun 13, 2024)
17-59185117-C-A		not specified	Uncertain significance (Nov 09, 2024)
17-59185130-A-G		not specified	Uncertain significance (Sep 20, 2024)
17-59185142-A-G		not specified	Likely benign (Jun 07, 2024)
17-59185196-A-G		not specified	Likely benign (Aug 08, 2022)
17-59185503-G-A		not specified	Uncertain significance (Dec 19, 2023)
17-59185514-G-C		not specified	Uncertain significance (Apr 18, 2023)
17-59193532-C-T		not specified	Uncertain significance (Aug 12, 2024)
17-59193567-G-T		not specified	Uncertain significance (Sep 17, 2021)
17-59193609-C-T		not specified	Uncertain significance (Jan 08, 2024)
17-59193631-C-A		not specified	Uncertain significance (Aug 21, 2024)
17-59193657-C-T		not specified	Uncertain significance (Aug 21, 2024)
17-59193681-C-G		not specified	Uncertain significance (May 09, 2023)
17-59194757-G-C		not specified	Uncertain significance (Dec 20, 2023)
17-59195344-C-T		not specified	Uncertain significance (Jul 09, 2024)
17-59195352-C-T		not specified	Uncertain significance (Sep 13, 2023)
17-59195431-C-G		not specified	Uncertain significance (Dec 09, 2023)
17-59197551-G-A		not specified	Uncertain significance (Mar 08, 2024)
17-59197573-G-A		not specified	Uncertain significance (Nov 22, 2023)
17-59197718-A-G		not specified	Uncertain significance (Aug 21, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
PRR11	protein_coding	protein_coding	ENST00000262293	9	49207

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
8.42e-7	0.921	125735	0	11	125746	0.0000437

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.917	158	194	0.815	0.00000986	2318
Missense in Polyphen		35	49.628	0.70525		694
Synonymous	0.662	65	72.2	0.901	0.00000396	732
Loss of Function	1.73	13	21.7	0.599	0.00000126	236

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000615	0.0000615
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.0000619	0.0000615
Middle Eastern	0.0000544	0.0000544
South Asian	0.0000653	0.0000653
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Plays a critical role in cell cycle progression. {ECO:0000269|PubMed:23246489}.

Intolerance Scores

• loftool: 0.310
• rvis_EVS: 0.11
• rvis_percentile_EVS: 61.91

Haploinsufficiency Scores

• pHI: 0.565
• hipred: N
• hipred_score: 0.123
• ghis: 0.652

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.645

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Prr11

Gene ontology

• Biological process: cell cycle arrest;regulation of cell cycle
• Cellular component: nucleus;cytoplasm;membrane