PRR14

proline rich 14

Basic information

Region (hg38): 16:30650717-30656413

Links

ENSG00000156858 ∙ NCBI:78994 ∙ OMIM:617423 ∙ HGNC:28458 ∙ Uniprot:Q9BWN1 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the PRR14 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the PRR14 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			48	2		50
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	48	2	0

Variants in PRR14

This is a list of pathogenic ClinVar variants found in the PRR14 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
16-30651813-G-A		not specified	Uncertain significance (Sep 30, 2024)
16-30651822-G-T		not specified	Uncertain significance (Jun 03, 2024)
16-30651866-C-G		not specified	Uncertain significance (Jul 19, 2023)
16-30651866-C-T		not specified	Uncertain significance (Feb 19, 2025)
16-30651943-A-C		not specified	Uncertain significance (May 03, 2023)
16-30652734-C-G		not specified	Uncertain significance (May 23, 2023)
16-30652736-T-C		not specified	Uncertain significance (Mar 14, 2023)
16-30652797-C-T		not specified	Uncertain significance (Jun 18, 2021)
16-30652815-G-T		not specified	Uncertain significance (May 30, 2024)
16-30652820-G-C		not specified	Uncertain significance (Oct 26, 2023)
16-30652823-G-A		not specified	Uncertain significance (Dec 28, 2022)
16-30652828-G-T		not specified	Uncertain significance (Aug 27, 2024)
16-30652835-C-A		not specified	Likely benign (Jun 28, 2023)
16-30652984-C-T		not specified	Uncertain significance (Sep 16, 2021)
16-30652985-G-A		not specified	Uncertain significance (Oct 20, 2021)
16-30653038-C-T		not specified	Uncertain significance (Dec 11, 2024)
16-30653098-G-A		not specified	Uncertain significance (Jun 07, 2023)
16-30653376-T-G		not specified	Uncertain significance (Jul 14, 2021)
16-30653393-T-C		not specified	Uncertain significance (Feb 18, 2025)
16-30654253-G-A		not specified	Likely benign (Oct 06, 2024)
16-30654262-C-T		not specified	Likely benign (Dec 24, 2024)
16-30654283-A-C		not specified	Uncertain significance (Nov 27, 2023)
16-30654300-T-C		not specified	Uncertain significance (Dec 04, 2024)
16-30654301-C-T		not specified	Uncertain significance (Sep 22, 2023)
16-30654632-C-G		not specified	Uncertain significance (May 13, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
PRR14	protein_coding	protein_coding	ENST00000542965	11	5724

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.169	0.831	125728	0	17	125745	0.0000676

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.784	333	376	0.886	0.0000234	3658
Missense in Polyphen		112	141.04	0.79412		1425
Synonymous	0.240	146	150	0.975	0.00000869	1339
Loss of Function	3.69	7	28.1	0.249	0.00000174	267

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000454	0.000452
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.0000359	0.0000352
Middle Eastern	0.0000544	0.0000544
South Asian	0.0000327	0.0000327
Other	0.000163	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Functions in tethering peripheral heterochromatin to the nuclear lamina during interphase, possibly through the interaction with heterochromatin protein CBX5/HP1 alpha (PubMed:24209742). Might play a role in reattaching heterochromatin to the nuclear lamina at mitotic exit (PubMed:24209742). Promotes myoblast differentiation during skeletal myogenesis, possibly by stimulating transcription factor MyoD activity via binding to CBX5/HP1 alpha (PubMed:25906157). Involved in the positive regulation of the PI3K-Akt-mTOR signaling pathway and in promoting cell proliferation, possibly via binding to GRB2 (PubMed:27041574). {ECO:0000269|PubMed:24209742, ECO:0000269|PubMed:25906157, ECO:0000269|PubMed:27041574}.

Recessive Scores

• pRec: 0.0814

Intolerance Scores

• loftool: 0.512
• rvis_EVS: -0.24
• rvis_percentile_EVS: 36.23

Haploinsufficiency Scores

• pHI: 0.292
• hipred: Y
• hipred_score: 0.609
• ghis: 0.587

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.627

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	High
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Prr14

Gene ontology

• Biological process: muscle organ development
• Cellular component: nuclear lamina;nucleoplasm;chromosome
• Molecular function: protein binding