PRR15

proline rich 15

Basic information

Region (hg38): 7:29563835-29567293

Links

ENSG00000176532 ∙ NCBI:222171 ∙ OMIM:618344 ∙ HGNC:22310 ∙ Uniprot:Q8IV56 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the PRR15 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the PRR15 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			14	1		15
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	14	1	0

Variants in PRR15

This is a list of pathogenic ClinVar variants found in the PRR15 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-29566336-G-A		not specified	Uncertain significance (Jun 13, 2023)
7-29566345-G-A		not specified	Uncertain significance (Dec 12, 2023)
7-29566379-T-C		not specified	Uncertain significance (Jan 24, 2025)
7-29566418-G-A		not specified	Uncertain significance (Sep 17, 2021)
7-29566420-G-T		not specified	Uncertain significance (Apr 24, 2023)
7-29566442-C-A		not specified	Uncertain significance (Nov 09, 2021)
7-29566457-C-A		not specified	Uncertain significance (Nov 15, 2024)
7-29566478-C-T		not specified	Uncertain significance (Oct 17, 2023)
7-29566493-G-C		not specified	Uncertain significance (Nov 21, 2024)
7-29566525-G-C		not specified	Uncertain significance (Jun 27, 2023)
7-29566541-C-A		not specified	Uncertain significance (Jan 10, 2025)
7-29566544-C-G		not specified	Uncertain significance (Jul 31, 2023)
7-29566615-C-T		not specified	Uncertain significance (Jan 24, 2023)
7-29566642-G-C		not specified	Uncertain significance (May 17, 2023)
7-29566652-T-G		not specified	Uncertain significance (Jan 19, 2025)
7-29566654-C-T		not specified	Uncertain significance (Dec 06, 2024)
7-29566703-A-G		not specified	Uncertain significance (Dec 15, 2023)
7-29566704-C-G		not specified	Likely benign (Jan 26, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
PRR15	protein_coding	protein_coding	ENST00000319694	1	3485

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.535	0.411	120915	0	2	120917	0.00000827

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.341	82	73.8	1.11	0.00000354	806
Missense in Polyphen		25	21.876	1.1428		229
Synonymous	0.941	26	32.9	0.791	0.00000159	256
Loss of Function	1.39	0	2.26	0.00	9.61e-8	27

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00000948	0.00000933
Middle Eastern	0.00	0.00
South Asian	0.0000350	0.0000328
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May have a role in proliferation and/or differentiation. {ECO:0000250}.

Recessive Scores

• pRec: 0.108

Haploinsufficiency Scores

• pHI: 0.587
• hipred: N
• hipred_score: 0.215

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.192

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	High
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Prr15

Gene ontology

• Biological process: multicellular organism development