PRR22

proline rich 22

Basic information

Region (hg38): 19:5782960-5784746

Links

ENSG00000212123 ∙ NCBI:163154 ∙ ∙ HGNC:28354 ∙ Uniprot:Q8IZ63 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the PRR22 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the PRR22 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			51	4		55
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	51	4	0

Variants in PRR22

This is a list of pathogenic ClinVar variants found in the PRR22 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-5782989-T-C		not specified	Likely benign (Dec 10, 2024)
19-5783013-C-G		not specified	Uncertain significance (Jun 27, 2022)
19-5783015-G-A		not specified	Uncertain significance (May 24, 2023)
19-5783019-G-C		not specified	Uncertain significance (Oct 02, 2023)
19-5783037-C-G		not specified	Uncertain significance (Apr 20, 2024)
19-5783042-G-T		not specified	Uncertain significance (Aug 09, 2021)
19-5783087-G-A		not specified	Uncertain significance (Feb 23, 2023)
19-5783112-G-C		not specified	Uncertain significance (Jan 24, 2024)
19-5783133-G-C		not specified	Uncertain significance (Apr 24, 2024)
19-5783141-G-A		not specified	Uncertain significance (Aug 11, 2024)
19-5783145-G-A		not specified	Uncertain significance (Sep 22, 2022)
19-5783150-G-A		not specified	Uncertain significance (Jul 19, 2023)
19-5783183-A-T		not specified	Uncertain significance (Oct 01, 2024)
19-5783219-G-A		not specified	Uncertain significance (Mar 28, 2024)
19-5783223-C-A		not specified	Uncertain significance (Mar 04, 2024)
19-5783223-C-T		not specified	Uncertain significance (Oct 03, 2023)
19-5783244-G-C		not specified	Uncertain significance (Feb 11, 2022)
19-5783267-C-T		not specified	Uncertain significance (Nov 30, 2022)
19-5783277-C-T		not specified	Uncertain significance (Dec 01, 2022)
19-5783339-T-C		not specified	Uncertain significance (Oct 28, 2024)
19-5783358-G-A		not specified	Uncertain significance (Jun 05, 2023)
19-5783405-G-A		not specified	Uncertain significance (Sep 20, 2023)
19-5783463-C-A		not specified	Uncertain significance (Feb 23, 2023)
19-5783478-C-T		not specified	Uncertain significance (Nov 01, 2022)
19-5783496-T-C		not specified	Uncertain significance (Sep 06, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
PRR22	protein_coding	protein_coding	ENST00000419421	3	1806

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0142	0.695	124055	0	6	124061	0.0000242

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.00507	242	242	1.00	0.0000145	2626
Missense in Polyphen		68	69.676	0.97595		799
Synonymous	-1.07	137	122	1.12	0.00000902	937
Loss of Function	0.614	3	4.39	0.684	1.87e-7	51

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000297	0.0000297
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000400	0.0000358
Middle Eastern	0.00	0.00
South Asian	0.0000328	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Intolerance Scores

• loftool: 0.447
• rvis_EVS: -0.05
• rvis_percentile_EVS: 50.22

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.146
• ghis: 0.411

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0601

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	High
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Prr22