PRSS58

serine protease 58, the group of Serine proteases

Basic information

Region (hg38): 7:142252143-142258058

Links

ENSG00000258223 ∙ NCBI:136541 ∙ ∙ HGNC:39125 ∙ Uniprot:Q8IYP2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the PRSS58 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the PRSS58 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			25	2		27
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	25	2	0

Variants in PRSS58

This is a list of pathogenic ClinVar variants found in the PRSS58 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-142252229-T-G		not specified	Uncertain significance (Dec 22, 2023)
7-142252253-G-T		not specified	Uncertain significance (Jul 20, 2021)
7-142252293-T-G		not specified	Uncertain significance (Oct 30, 2024)
7-142252301-C-T		not specified	Uncertain significance (Jan 08, 2024)
7-142252307-C-T		not specified	Uncertain significance (Nov 10, 2022)
7-142252357-G-C		not specified	Uncertain significance (Feb 05, 2024)
7-142252367-C-A		not specified	Uncertain significance (Dec 13, 2024)
7-142252483-G-T		not specified	Uncertain significance (Jan 18, 2023)
7-142252530-T-A		not specified	Uncertain significance (Dec 03, 2024)
7-142252545-G-A		not specified	Uncertain significance (Dec 23, 2024)
7-142252547-A-C		not specified	Uncertain significance (Jul 30, 2024)
7-142252549-C-G		not specified	Uncertain significance (Sep 21, 2021)
7-142252552-G-A		not specified	Uncertain significance (Jul 16, 2021)
7-142252566-G-T		not specified	Uncertain significance (Jun 24, 2022)
7-142252600-C-T		not specified	Uncertain significance (Aug 30, 2021)
7-142255081-G-A		not specified	Uncertain significance (Feb 06, 2023)
7-142255112-T-G		not specified	Uncertain significance (Jul 26, 2022)
7-142255121-A-G		not specified	Uncertain significance (Feb 14, 2025)
7-142255161-C-A		not specified	Uncertain significance (Dec 31, 2024)
7-142255161-C-G		not specified	Uncertain significance (Mar 28, 2024)
7-142255165-G-C		not specified	Likely benign (May 08, 2023)
7-142255189-T-A		not specified	Uncertain significance (Oct 26, 2021)
7-142255220-G-A		not specified	Uncertain significance (Jun 07, 2023)
7-142255301-C-T		not specified	Uncertain significance (Oct 26, 2021)
7-142255303-C-T		not specified	Likely benign (Dec 13, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
PRSS58	protein_coding	protein_coding	ENST00000552471	5	5916

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
3.07e-9	0.0486	125683	0	49	125732	0.000195

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.537	146	129	1.13	0.00000623	1575
Missense in Polyphen		45	50.342	0.89389		612
Synonymous	-1.11	60	50.0	1.20	0.00000268	463
Loss of Function	-0.543	12	10.1	1.18	5.25e-7	123

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000646	0.000646
Ashkenazi Jewish	0.00	0.00
East Asian	0.000109	0.000109
Finnish	0.00	0.00
European (Non-Finnish)	0.000150	0.000149
Middle Eastern	0.000109	0.000109
South Asian	0.000196	0.000196
Other	0.000655	0.000652

dbNSFP

Source: dbNSFP

Intolerance Scores

• rvis_EVS: 0.24
• rvis_percentile_EVS: 69.37

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.146

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Prss58

Gene ontology

• Biological process: proteolysis
• Cellular component: extracellular region;secretory granule
• Molecular function: serine-type endopeptidase activity