PTPRG-AS1

PTPRG antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 3:62214400-62369406

Links

ENSG00000241472 ∙ NCBI:100506994 ∙ ∙ HGNC:44638 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the PTPRG-AS1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the PTPRG-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			42	10	1	53
Total	0	0	42	10	1

Variants in PTPRG-AS1

This is a list of pathogenic ClinVar variants found in the PTPRG-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
3-62218854-A-G		not specified	Uncertain significance (May 13, 2024)
3-62218908-T-C		not specified	Uncertain significance (Aug 19, 2024)
3-62218921-T-G		not specified	Uncertain significance (Dec 27, 2022)
3-62218949-C-G		not specified	Uncertain significance (Dec 14, 2021)
3-62231263-G-A		not specified	Uncertain significance (Jan 04, 2022)
3-62243827-A-G		not specified	Uncertain significance (Mar 29, 2023)
3-62243845-G-A		not specified	Uncertain significance (Sep 10, 2024)
3-62243892-A-C		not specified	Uncertain significance (Jan 04, 2022)
3-62255131-G-A		not specified	Uncertain significance (Sep 06, 2022)
3-62255160-A-G		not specified	Uncertain significance (Oct 16, 2023)
3-62255165-A-G		not specified	Uncertain significance (Mar 08, 2025)
3-62262808-G-A		not specified	Uncertain significance (Jan 16, 2024)
3-62262877-A-T		not specified	Uncertain significance (May 15, 2024)
3-62262891-G-C		not specified	Uncertain significance (Jan 21, 2025)
3-62267418-A-G		not specified	Uncertain significance (Sep 03, 2024)
3-62267434-G-T		not specified	Uncertain significance (Feb 16, 2023)
3-62267739-T-C		not specified	Uncertain significance (Mar 01, 2025)
3-62267754-A-G		not specified	Uncertain significance (Mar 16, 2022)
3-62269096-C-T		not specified	Uncertain significance (Sep 16, 2021)
3-62269137-C-T		not specified	Uncertain significance (Dec 16, 2024)
3-62271408-G-A		not specified	Uncertain significance (Aug 17, 2022)
3-62271410-C-G		not specified	Uncertain significance (Jan 10, 2025)
3-62271489-T-C		not specified	Uncertain significance (May 10, 2022)
3-62271519-G-A		EBV-positive nodal T- and NK-cell lymphoma	Likely benign (-)
3-62271554-A-G		not specified	Uncertain significance (May 09, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP