PTPRG-AS1

PTPRG antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 3:62214400-62369406

Links

ENSG00000241472NCBI:100506994HGNC:44638GenCCjaxSfariGnomADPubmedClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the PTPRG-AS1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the PTPRG-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type Pathogenic Likely pathogenic VUS Likely benign Benign Sum
synonymous
0
missense
0
nonsense
0
start loss
0
frameshift
0
inframe indel
0
splice donor/acceptor (+/-2bp)
0
splice region
0
non coding
42
clinvar
10
clinvar
1
clinvar
53
Total 0 0 42 10 1

Variants in PTPRG-AS1

This is a list of pathogenic ClinVar variants found in the PTPRG-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position Type Phenotype Significance ClinVar
3-62218854-A-G not specified Uncertain significance (May 13, 2024)3311564
3-62218908-T-C not specified Uncertain significance (Aug 19, 2024)3428060
3-62218921-T-G not specified Uncertain significance (Dec 27, 2022)2372962
3-62218949-C-G not specified Uncertain significance (Dec 14, 2021)2210713
3-62231263-G-A not specified Uncertain significance (Jan 04, 2022)2269210
3-62243827-A-G not specified Uncertain significance (Mar 29, 2023)2531382
3-62243845-G-A not specified Uncertain significance (Sep 10, 2024)3428062
3-62243892-A-C not specified Uncertain significance (Jan 04, 2022)2269129
3-62255131-G-A not specified Uncertain significance (Sep 06, 2022)2310505
3-62255160-A-G not specified Uncertain significance (Oct 16, 2023)3149391
3-62255165-A-G not specified Uncertain significance (Mar 08, 2025)3785241
3-62262808-G-A not specified Uncertain significance (Jan 16, 2024)2361628
3-62262877-A-T not specified Uncertain significance (May 15, 2024)3311553
3-62262891-G-C not specified Uncertain significance (Jan 21, 2025)3785236
3-62267418-A-G not specified Uncertain significance (Sep 03, 2024)3428061
3-62267434-G-T not specified Uncertain significance (Feb 16, 2023)2486659
3-62267739-T-C not specified Uncertain significance (Mar 01, 2025)3785231
3-62267754-A-G not specified Uncertain significance (Mar 16, 2022)2278877
3-62269096-C-T not specified Uncertain significance (Sep 16, 2021)2208476
3-62269137-C-T not specified Uncertain significance (Dec 16, 2024)3785222
3-62271408-G-A not specified Uncertain significance (Aug 17, 2022)2223061
3-62271410-C-G not specified Uncertain significance (Jan 10, 2025)3785235
3-62271489-T-C not specified Uncertain significance (May 10, 2022)2288383
3-62271519-G-A EBV-positive nodal T- and NK-cell lymphoma Likely benign (-)2681508
3-62271554-A-G not specified Uncertain significance (May 09, 2023)2545420

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP