RANGRF
protein-codingRAN guanine nucleotide release factor
Gene summary
This gene encodes a protein that has been shown to function as a guanine nucleotide release factor in mouse and to regulate the expression and function of the Nav1.5 cardiac sodium channel in human. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2010]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~1.4 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: Unknown
Disease ID:MONDO:0015263
Submitter: Genomics England PanelApp
Inheritance Pattern: AD
Disease ID:MONDO:0015263
Submitter: G2P
Inheritance Pattern: AD
Disease ID:MONDO:0015263
Submitter: ClinGen
RANGRF encodes the MOG1 protein, a binding partner of Nav1.5 (encoded by SCN5A). MOG1 is proposed to act as a chaperone protein and regulate the surface expression of Nav1.5 (PMID:18184654, PMID: 35675436) - a protein with a well established causal relationship with Brugada syndrome. Due to its functional interaction with Nav1.5, RANGRF was initially investigated in relation to autosomal dominant Brugada syndrome in 2011 (Kattygnarath et al. PMID:21447824). However, the high allele frequency of loss-of-function polymorphisms suggests that RANGRF haploinsufficiency is not an autosomal dominant cause of Brugada syndrome. For example, the loss-of-function p.Glu61Ter polymorphism (PMIDs: 22010171, 21621375, 24142675) is too common to be an autosomal dominant cause of Brugada syndrome (allele frequency = 4.49 x 10-3, 29 homozygotes, gnomAD v4.1). Further, RANGRF is highly tolerant to loss-of-function variation (pLI = 0, LOEUF = 1.107, gnomAD v 4.1). The clinical genetics evidence in support of RANGRF being a monogenic cause of autosomal dominant Brugada syndrome thus rests on a cohort study from 2011, which proposes a dominant-negative mechanism. Kattygnarath et al. reported a RANGRF variant (c.249G>C, p.Glu83Asp) in a 41-year-old female who experienced a sudden cardiac arrest with suspected Brugada syndrome (PMID:21447824). Functional work was performed to assess the effect of this variant. Overexpression of RANGRF in HEK293 cells was observed to increase sodium current density, whereas overexpression of the p.Glu83Asp variant alone or in combination with the wild type protein did not. Further, rat cardiomyocytes transfected with the p.Glu83Asp variant displayed decreased Nav1.5 localisation around cell membrane regions relative to RANGRF wild-type cardiomyocytes. This study has subsequently been criticized on the basis that the presented ECGs were not diagnostic of Brugada syndrome and doubts have been raised as to the inference of a dominant-negative mechanism from the experimental data presented (PMID: 22010171). The p.Glu83Asp variant also has a relatively high population allele frequency (4.71 x 10-5, gnomAD v4.1). There are further experimental data in support of the physical interaction between the MOG1 protein and Nav1.5 and a potential role in Nav1.5 trafficking (PMID: 30282806, PMID: 35675436). Notably, a gene therapy has recently been developed, which is reported to upregulate RANGRF and increase cell surface Nav1.5 expression in a mouse model of SCN5A-mediated Brugada syndrome (PMID: 35675436). However, this mechanism is complicated by the observation that homozygous RANGRF knockout in mice does not affect Nav1.5 expression, localisation or activity in vivo, although cardiac features were observed (PMID: 35533905). Despite the emerging experimental insights, no further variants in RANGRF have been reported in association with Brugada syndrome since the previous ClinGen disputed classification was issued in 2017. The published experimental data alludes to a possible role for RANGRF variants in modifying cardiac disease risk by modulating Nav1.5 trafficking to the cell membrane. However, there is an absence of clinical genetic evidence to support an autosomal dominant mechanism of disease. Indeed, the high allele frequency of loss-of-function RANGRF variants renders this proposed mechanism doubtful. RANGRF was originally classified as disputed for Brugada syndrome by the ClinGen Brugada Syndrome Gene Curation Expert Panel in 2017. This gene-disease relationship was re-evaluated on 28 October, 2025, by the Hereditary Cardiovascular Disorders GCEP. Based on the passage of time, the total absence of new clinical genetic data and the publication of conflicting opinions, this gene-disease relationship has been classified as refuted. This classification was approved by the ClinGen HCVD GCEP on 28 October, 2025 (in accordance with SOP Version 11).
Inheritance Pattern: AD
Disease ID:MONDO:0015263
Submitter: Ambry Genetics
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to RANGRF variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_016492.5. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 1 | 40 | 3 | 44 | ||
| missense | 86 | 3 | 89 | |||
| nonsense | 5 | 1 | 6 | |||
| start loss | 1 | 1 | ||||
| frameshift | 4 | 4 | ||||
| splice donor/acceptor (+/-2bp) | 4 | 4 | ||||
| Total | 0 | 0 | 101 | 44 | 3 | 148 |
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_057576.2 | 5 | MANE Select | |
| Ensembl | ENSP00000226105.6 | 5 | MANE Select | |
| RefSeq | NP_001171272.1 | 4 | Standard | |
| RefSeq | NP_001171273.1 | 3 | Standard |
Model Organisms & Knockout Phenotypes
Observed phenotypic effects in mouse and zebrafish models
| Gene / Model | Organism | Observed Phenotype |
|---|---|---|
| rangrf | Danio rerio | Structure: heart contraction Quality: decreased rate abnormal |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Phase 0 - rapid depolarisation
- Cardiac conduction
- Muscle contraction
Biological Process
- regulation of heart rate
- regulation of membrane depolarization
- endoplasmic reticulum to Golgi vesicle-mediated transport
- protein exit from endoplasmic reticulum
- regulation of membrane potential
Molecular Function
- guanyl-nucleotide exchange factor activity
- Ran guanyl-nucleotide exchange factor activity
- Ran GTPase binding
- protein transporter activity
- sodium channel regulator activity
Cellular Component
- nucleus
- nucleoplasm
- cytoplasm
- rough endoplasmic reticulum
- cytosol
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000226105
- Coding exons
- 5
- Length
- 1596
- Individuals with no LoFs
- 124733
- Homozygous LoFs
- 5
- Heterozygous LoFs
- 1010
- Defined
- 125748
- p
- 0.00404
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | -0.223 | 109 | 103 | 1.06 | 0.00000519 | 1210 |
| Missense (PolyPhen) | 39 | 38.196 | 1.0211 | 492 | ||
| Synonymous | 0.208 | 40 | 41.7 | 0.959 | 0.00000231 | 378 |
| Loss of Function | 0.622 | 8 | 10.1 | 0.789 | 5.46e-7 | 97 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0.00087 | 0.00086 | rare |
| Latino/Admixed American | 0.0011 | 0.0011 | notable |
| Ashkenazi Jewish | 0.00020 | 0.00020 | rare |
| East Asian | 0.00011 | 0.00011 | rare |
| Finnish | 0.011 | 0.011 | notable |
| European (Non-Finnish) | 0.0057 | 0.0056 | notable |
| South Asian | 0.0018 | 0.0018 | notable |
| Other | 0.0057 | 0.0057 | notable |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: May regulate the intracellular trafficking of RAN (PubMed:11290418). Promotes guanine nucleotide release from RAN and inhibits binding of new GTP by preventing the binding of the RAN guanine nucleotide exchange factor RCC1 (PubMed:29040603). Regulates the levels of GTP-bound RAN in the nucleus, and thereby plays a role in the regulation of RAN-dependent mitotic spindle dynamics (PubMed:29040603). Enhances the expression of SCN5A at the cell membrane in cardiomyocytes (PubMed:18184654, PubMed:23420830, PubMed:21621375). {ECO:0000269|PubMed:11290418, ECO:0000269|PubMed:18184654, ECO:0000269|PubMed:21621375, ECO:0000269|PubMed:23420830, ECO:0000269|PubMed:29040603}.;
Recessive Scores
- pRec
- 0.107
Intolerance Scores
- LoFtool
- 0.465
- RVIS EVS
- -0.21
- RVIS percentile EVS
- 38.58
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.750
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |