RASD1

ras related dexamethasone induced 1

Basic information

Region (hg38): 17:17494437-17496395

Links

ENSG00000108551 ∙ NCBI:51655 ∙ OMIM:605550 ∙ HGNC:15828 ∙ Uniprot:Q9Y272 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RASD1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RASD1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			16			16
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	16	0	0

Variants in RASD1

This is a list of pathogenic ClinVar variants found in the RASD1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
17-17495165-C-T		not specified	Uncertain significance (Jan 17, 2023)
17-17495216-C-A		not specified	Uncertain significance (Sep 22, 2023)
17-17495226-A-C		not specified	Uncertain significance (Apr 23, 2024)
17-17495232-C-T		not specified	Uncertain significance (Aug 08, 2022)
17-17495265-C-T		not specified	Uncertain significance (May 16, 2023)
17-17495342-G-A		not specified	Uncertain significance (May 07, 2024)
17-17495431-C-G		not specified	Uncertain significance (Jan 03, 2024)
17-17495447-T-G		not specified	Uncertain significance (Oct 26, 2021)
17-17495496-C-G		not specified	Uncertain significance (Jun 18, 2021)
17-17495627-T-C		not specified	Uncertain significance (Jun 11, 2024)
17-17495980-G-A		not specified	Uncertain significance (Sep 14, 2022)
17-17495985-G-C		not specified	Uncertain significance (Apr 07, 2023)
17-17495986-A-G		not specified	Uncertain significance (Apr 07, 2023)
17-17496013-T-C		not specified	Uncertain significance (Nov 09, 2021)
17-17496040-G-T		not specified	Uncertain significance (Sep 20, 2023)
17-17496046-T-A		not specified	Uncertain significance (Apr 29, 2024)
17-17496085-A-G		not specified	Uncertain significance (Apr 07, 2023)
17-17496087-G-A		not specified	Uncertain significance (May 17, 2023)
17-17496097-T-C		not specified	Uncertain significance (Apr 07, 2023)
17-17496115-T-G		not specified	Uncertain significance (Apr 07, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RASD1	protein_coding	protein_coding	ENST00000225688	2	1959

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0387	0.848	125555	0	17	125572	0.0000677

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.374	160	174	0.920	0.00000797	1850
Missense in Polyphen		48	64.828	0.74042		672
Synonymous	0.281	72	75.1	0.959	0.00000356	550
Loss of Function	1.28	3	6.53	0.460	2.76e-7	82

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000149	0.000149
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.000109	0.000106
Middle Eastern	0.00	0.00
South Asian	0.0000335	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Small GTPase. Negatively regulates the transcription regulation activity of the APBB1/FE65-APP complex via its interaction with APBB1/FE65 (By similarity). {ECO:0000250}.
• Pathway: Cushing,s syndrome - Homo sapiens (human);Circadian entrainment - Homo sapiens (human) (Consensus)

Recessive Scores

• pRec: 0.960

Intolerance Scores

• loftool: 0.451
• rvis_EVS: -0.32
• rvis_percentile_EVS: 31.46

Haploinsufficiency Scores

• pHI: 0.194
• hipred: Y
• hipred_score: 0.866
• ghis: 0.560

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.854

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rasd1
• Phenotype: nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan); hearing/vestibular/ear phenotype; reproductive system phenotype; cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan); behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); cellular phenotype; homeostasis/metabolism phenotype; endocrine/exocrine gland phenotype

Gene ontology

• Biological process: signal transduction;G protein-coupled receptor signaling pathway;nitric oxide mediated signal transduction;negative regulation of transcription, DNA-templated
• Cellular component: nucleus;plasma membrane;sarcoplasmic reticulum;perinuclear region of cytoplasm
• Molecular function: GTPase activity;protein binding;GTP binding