RASL11A

RAS like family 11 member A, the group of RAS type GTPase family

Basic information

Region (hg38): 13:27270830-27275192

Links

ENSG00000122035 ∙ NCBI:387496 ∙ OMIM:612403 ∙ HGNC:23802 ∙ Uniprot:Q6T310 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RASL11A gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RASL11A gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			11	1		12
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region				1		1
non coding						0
Total	0	0	11	1	0

Variants in RASL11A

This is a list of pathogenic ClinVar variants found in the RASL11A region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
13-27270973-T-G		not specified	Uncertain significance (Jan 10, 2025)
13-27271028-C-G		not specified	Uncertain significance (Dec 20, 2022)
13-27271516-A-G		not specified	Uncertain significance (Dec 15, 2024)
13-27271707-G-T		not specified	Uncertain significance (Dec 16, 2024)
13-27273029-C-T			Likely benign (Aug 01, 2022)
13-27273103-A-G		not specified	Uncertain significance (Dec 12, 2024)
13-27273111-A-G		not specified	Uncertain significance (Jan 21, 2025)
13-27273112-C-T		not specified	Uncertain significance (Jul 14, 2023)
13-27273139-G-A		not specified	Uncertain significance (Jul 25, 2023)
13-27273160-G-A		not specified	Uncertain significance (Jan 04, 2025)
13-27273229-G-A		not specified	Uncertain significance (Mar 07, 2025)
13-27273243-C-G		not specified	Uncertain significance (Mar 06, 2025)
13-27273267-G-A		not specified	Uncertain significance (Mar 14, 2023)
13-27273274-G-A		not specified	Uncertain significance (Feb 23, 2023)
13-27273288-G-C		not specified	Uncertain significance (Jul 21, 2021)
13-27273322-G-C		not specified	Uncertain significance (Sep 30, 2021)
13-27273364-A-G		not specified	Uncertain significance (Mar 22, 2023)
13-27273366-G-A		not specified	Likely benign (Dec 06, 2022)
13-27273423-A-G		not specified	Uncertain significance (Nov 11, 2024)
13-27273441-C-T		not specified	Uncertain significance (Sep 14, 2022)
13-27273489-G-A		not specified	Uncertain significance (Dec 13, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RASL11A	protein_coding	protein_coding	ENST00000241463	4	3364

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00000159	0.246	125712	0	36	125748	0.000143

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.805	115	142	0.810	0.00000841	1553
Missense in Polyphen		41	57.835	0.70891		624
Synonymous	-0.150	62	60.5	1.02	0.00000364	491
Loss of Function	0.0873	9	9.29	0.969	4.84e-7	103

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000977	0.000977
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.000132	0.000132
Middle Eastern	0.0000544	0.0000544
South Asian	0.0000327	0.0000327
Other	0.000163	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Regulator of rDNA transcription. Acts in cooperation UBF/UBTF and positively regulates RNA polymerase I transcription (By similarity). {ECO:0000250}.

Recessive Scores

• pRec: 0.116

Intolerance Scores

• loftool: 0.395
• rvis_EVS: -0.14
• rvis_percentile_EVS: 43.29

Haploinsufficiency Scores

• pHI: 0.161
• hipred: N
• hipred_score: 0.459
• ghis: 0.546

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.185

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rasl11a

Gene ontology

• Biological process: signal transduction;positive regulation of transcription by RNA polymerase I
• Cellular component: nucleolus;membrane
• Molecular function: GTPase activity;GTP binding