RBAK-RBAKDN

RBAK-RBAKDN readthrough

Basic information

Region (hg38): 7:4983717-5073221

Links

ENSG00000272968 ∙ NCBI:100533952 ∙ ∙ HGNC:42971 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RBAK-RBAKDN gene.

• Inborn genetic diseases (25 variants)
• Malignant tumor of prostate (1 variants)
• not provided (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RBAK-RBAKDN gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			4	1		5
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			21	1		22
Total	0	0	25	2	0

Variants in RBAK-RBAKDN

This is a list of pathogenic ClinVar variants found in the RBAK-RBAKDN region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-5063702-G-C		not specified	Uncertain significance (Jan 03, 2022)
7-5063746-A-G		not specified	Uncertain significance (Oct 12, 2021)
7-5063782-C-A		not specified	Uncertain significance (Oct 12, 2021)
7-5064006-G-T		not specified	Uncertain significance (Aug 16, 2021)
7-5064054-A-G		not specified	Uncertain significance (Dec 22, 2023)
7-5064087-A-T		not specified	Uncertain significance (Oct 03, 2022)
7-5064172-G-A		not specified	Uncertain significance (Jul 20, 2022)
7-5064183-A-T		not specified	Uncertain significance (Oct 10, 2023)
7-5064217-C-T		not specified	Uncertain significance (Dec 21, 2022)
7-5064228-A-G		not specified	Uncertain significance (Jun 24, 2022)
7-5064325-A-C		not specified	Likely benign (Jun 27, 2022)
7-5064378-C-T		not specified	Uncertain significance (Oct 05, 2021)
7-5064379-G-A		not specified	Uncertain significance (Nov 08, 2022)
7-5064579-T-C		not specified	Uncertain significance (Dec 21, 2022)
7-5064806-T-A		not specified	Uncertain significance (Jun 29, 2023)
7-5064825-T-C		not specified	Uncertain significance (Oct 12, 2022)
7-5064832-G-C		not specified	Uncertain significance (Feb 05, 2024)
7-5064883-G-A		not specified	Uncertain significance (Feb 14, 2023)
7-5064921-G-C		not specified	Uncertain significance (Jun 12, 2023)
7-5064937-C-T		not specified	Uncertain significance (Dec 20, 2022)
7-5064958-A-G		not specified	Uncertain significance (Jan 24, 2024)
7-5065027-C-T		not specified	Uncertain significance (Sep 16, 2021)
7-5065058-A-T		Malignant tumor of prostate	Uncertain significance (-)
7-5065102-A-G		not specified	Likely benign (Sep 25, 2023)
7-5065111-C-T		not specified	Uncertain significance (Feb 05, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RBAK-RBAKDN	protein_coding	protein_coding	ENST00000396904	4	89504

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.489	0.492	125739	0	2	125741	0.00000795

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.362	49	56.7	0.865	0.00000282	713
Missense in Polyphen		13	19.697	0.65999		277
Synonymous	-1.11	29	22.3	1.30	0.00000128	208
Loss of Function	1.88	1	5.95	0.168	2.53e-7	70

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000904	0.0000904
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.210

Essentials

• essential_gene_CRISPR: N

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription, DNA-templated
• Cellular component: nucleus
• Molecular function: nucleic acid binding