RBM33

RNA binding motif protein 33, the group of RNA binding motif containing

Basic information

Region (hg38): 7:155644451-155781485

Previous symbols: [ "PRR8" ]

Links

ENSG00000184863 ∙ NCBI:155435 ∙ ∙ HGNC:27223 ∙ Uniprot:Q96EV2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RBM33 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RBM33 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				2		2
missense			59	1		60
nonsense						0
start loss			1			1
frameshift			1			1
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region				1		1
non coding						0
Total	0	0	61	3	0

Variants in RBM33

This is a list of pathogenic ClinVar variants found in the RBM33 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-155644890-T-G		not specified	Uncertain significance (Oct 04, 2022)
7-155680604-C-A		not specified	Uncertain significance (Oct 26, 2022)
7-155680630-A-G		not specified	Uncertain significance (May 23, 2024)
7-155680768-C-T		not specified	Uncertain significance (Jul 19, 2022)
7-155680778-G-T		not specified	Uncertain significance (Aug 04, 2023)
7-155680836-G-C		not specified	Uncertain significance (Apr 01, 2024)
7-155680859-C-T		not specified	Uncertain significance (May 16, 2024)
7-155680886-A-G		not specified	Uncertain significance (Oct 10, 2023)
7-155700805-C-T			Likely benign (Mar 01, 2023)
7-155700835-A-T		not specified	Likely benign (Oct 29, 2021)
7-155700844-A-T		not specified	Uncertain significance (May 13, 2024)
7-155706953-G-A		not specified	Uncertain significance (May 17, 2023)
7-155706956-G-A		not specified	Uncertain significance (May 09, 2022)
7-155706974-G-A		not specified	Uncertain significance (Mar 03, 2022)
7-155707061-C-T		not specified	Uncertain significance (Feb 06, 2023)
7-155711218-C-A		not specified	Uncertain significance (Jul 19, 2023)
7-155711273-C-T		not specified	Uncertain significance (Dec 01, 2022)
7-155711303-C-T		not specified	Uncertain significance (Jun 24, 2022)
7-155711331-G-A		not specified	Uncertain significance (Aug 10, 2023)
7-155711335-A-C		not specified	Uncertain significance (May 26, 2022)
7-155711335-A-G		not specified	Uncertain significance (Nov 14, 2023)
7-155711375-C-T		not specified	Uncertain significance (Jan 03, 2024)
7-155711420-C-T		not specified	Uncertain significance (Dec 27, 2023)
7-155737567-T-C		not specified	Uncertain significance (Feb 05, 2024)
7-155737585-A-C		not specified	Uncertain significance (Nov 01, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RBM33	protein_coding	protein_coding	ENST00000401878	18	137035

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.00	3.96e-9	125576	0	5	125581	0.0000199

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.80	535	666	0.804	0.0000402	7541
Missense in Polyphen		45	102.79	0.43779		1299
Synonymous	-1.66	308	273	1.13	0.0000184	2321
Loss of Function	6.92	1	57.7	0.0173	0.00000323	632

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000453	0.0000441
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Intolerance Scores

• loftool: 0.145
• rvis_EVS: -1.14
• rvis_percentile_EVS: 6.36

Haploinsufficiency Scores

• pHI: 0.151
• hipred: Y
• hipred_score: 0.591
• ghis: 0.631

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: E
• essential_gene_gene_trap: E
• gene_indispensability_pred: E
• gene_indispensability_score: 0.889

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rbm33

Gene ontology

• Molecular function: RNA binding