RBMS2

RNA binding motif single stranded interacting protein 2, the group of RNA binding motif containing

Basic information

Region (hg38): 12:56521820-56596193

Links

ENSG00000076067 ∙ NCBI:5939 ∙ OMIM:602387 ∙ HGNC:9909 ∙ Uniprot:Q15434 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RBMS2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RBMS2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			26			26
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	26	0	0

Variants in RBMS2

This is a list of pathogenic ClinVar variants found in the RBMS2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
12-56522072-A-G		not specified	Uncertain significance (Nov 13, 2023)
12-56562441-A-T		not specified	Uncertain significance (Feb 07, 2023)
12-56562448-C-T		not specified	Uncertain significance (Apr 04, 2024)
12-56568977-A-G		not specified	Uncertain significance (Jul 05, 2023)
12-56568980-G-C		not specified	Uncertain significance (Nov 18, 2022)
12-56568988-G-T		not specified	Uncertain significance (Aug 28, 2024)
12-56569905-G-C		not specified	Uncertain significance (Jun 03, 2022)
12-56571806-C-T		not specified	Uncertain significance (Jun 05, 2024)
12-56571843-T-C		not specified	Uncertain significance (Apr 12, 2024)
12-56581255-G-C		not specified	Uncertain significance (Jun 20, 2024)
12-56581482-C-T		not specified	Uncertain significance (Aug 08, 2022)
12-56581486-C-T		not specified	Uncertain significance (Oct 01, 2024)
12-56582063-T-C		not specified	Uncertain significance (May 08, 2024)
12-56582120-C-T		not specified	Uncertain significance (May 24, 2023)
12-56582142-C-G		not specified	Uncertain significance (Mar 27, 2023)
12-56586850-G-A		not specified	Uncertain significance (Jan 12, 2024)
12-56586876-G-C		not specified	Uncertain significance (Feb 27, 2024)
12-56586904-A-C		not specified	Uncertain significance (Nov 16, 2022)
12-56587638-C-T		not specified	Uncertain significance (May 15, 2023)
12-56587663-C-T		not specified	Uncertain significance (Nov 08, 2024)
12-56588300-C-T		not specified	Uncertain significance (Nov 21, 2024)
12-56588304-C-T		not specified	Uncertain significance (Jan 23, 2024)
12-56588370-T-A		not specified	Uncertain significance (Jul 09, 2021)
12-56588372-G-A		not specified	Uncertain significance (Jun 06, 2022)
12-56588934-G-C		not specified	Uncertain significance (Oct 30, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RBMS2	protein_coding	protein_coding	ENST00000262031	13	69033

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00000136	0.990	125710	0	37	125747	0.000147

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.835	190	225	0.843	0.0000112	2656
Missense in Polyphen		53	61.638	0.85986		774
Synonymous	0.591	76	82.8	0.917	0.00000427	796
Loss of Function	2.34	14	27.2	0.515	0.00000149	289

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000329	0.000327
Ashkenazi Jewish	0.00	0.00
East Asian	0.000218	0.000217
Finnish	0.0000924	0.0000924
European (Non-Finnish)	0.000185	0.000185
Middle Eastern	0.000218	0.000217
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.119

Intolerance Scores

• loftool: 0.688
• rvis_EVS: -0.74
• rvis_percentile_EVS: 13.94

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.414
• ghis: 0.618

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.539

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rbms2

Gene ontology

• Biological process: RNA processing
• Cellular component: nucleus;cytoplasm;cytosol;ribonucleoprotein complex
• Molecular function: RNA binding;mRNA 3'-UTR binding;poly(A) binding;poly(U) RNA binding