RCOR2

REST corepressor 2, the group of Myb/SANT domain containing

Basic information

Region (hg38): 11:63911230-63917164

Links

ENSG00000167771 ∙ NCBI:283248 ∙ OMIM:616019 ∙ HGNC:27455 ∙ Uniprot:Q8IZ40 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RCOR2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RCOR2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			26	1		27
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region					1	1
non coding						0
Total	0	0	26	1	0

Variants in RCOR2

This is a list of pathogenic ClinVar variants found in the RCOR2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-63911920-T-G		not specified	Uncertain significance (Jan 23, 2023)
11-63911933-G-C		not specified	Uncertain significance (Mar 23, 2022)
11-63911935-G-A		not specified	Uncertain significance (Jul 08, 2022)
11-63911977-G-A		not specified	Uncertain significance (Apr 07, 2023)
11-63912052-G-T		not specified	Uncertain significance (Feb 11, 2022)
11-63912085-G-A		not specified	Uncertain significance (May 10, 2023)
11-63912145-C-T		not specified	Uncertain significance (May 23, 2023)
11-63912146-G-C		not specified	Uncertain significance (Dec 19, 2022)
11-63912330-G-A		not specified	Uncertain significance (Aug 15, 2023)
11-63912409-C-T		not specified	Uncertain significance (Aug 02, 2022)
11-63912940-C-T		not specified	Uncertain significance (Aug 20, 2023)
11-63914033-G-T		not specified	Uncertain significance (May 20, 2024)
11-63914034-T-C		not specified	Uncertain significance (Mar 19, 2024)
11-63914079-G-A		not specified	Uncertain significance (Mar 29, 2024)
11-63914103-A-G		not specified	Uncertain significance (Apr 25, 2023)
11-63914142-G-A		not specified	Uncertain significance (May 05, 2023)
11-63914284-C-G		not specified	Uncertain significance (Nov 12, 2021)
11-63914310-C-T		not specified	Uncertain significance (Jul 12, 2022)
11-63914311-G-C		not specified	Uncertain significance (May 08, 2023)
11-63914481-T-C		not specified	Uncertain significance (Aug 17, 2021)
11-63914509-T-G		not specified	Uncertain significance (Jun 02, 2023)
11-63914698-G-C		not specified	Uncertain significance (Jan 26, 2023)
11-63914824-G-A			Benign (Mar 29, 2018)
11-63915201-T-C		not specified	Uncertain significance (Apr 25, 2022)
11-63915252-G-A		not specified	Uncertain significance (Dec 13, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RCOR2	protein_coding	protein_coding	ENST00000301459	12	5624

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.207	0.793	125734	0	14	125748	0.0000557

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.65	213	292	0.729	0.0000192	3305
Missense in Polyphen		25	79.184	0.31572		925
Synonymous	0.454	105	111	0.945	0.00000628	1079
Loss of Function	3.77	7	28.8	0.243	0.00000179	293

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000289	0.0000289
Ashkenazi Jewish	0.0000993	0.0000992
East Asian	0.000109	0.000109
Finnish	0.00	0.00
European (Non-Finnish)	0.0000794	0.0000791
Middle Eastern	0.000109	0.000109
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May act as a component of a corepressor complex that represses transcription. {ECO:0000305}.

Recessive Scores

• pRec: 0.112

Intolerance Scores

• loftool: 0.457
• rvis_EVS: -0.51
• rvis_percentile_EVS: 21.41

Haploinsufficiency Scores

• pHI: 0.154
• hipred: Y
• hipred_score: 0.563
• ghis: 0.657

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.993

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rcor2
• Phenotype: nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan); cellular phenotype

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II;negative regulation of transcription, DNA-templated
• Cellular component: nucleus;transcription factor complex;transcriptional repressor complex
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA-binding transcription factor activity;transcription corepressor activity;protein binding;transcription factor binding;enzyme binding;transcription regulatory region DNA binding