RGSL1

regulator of G protein signaling like 1

Basic information

Region (hg38): 1:182409192-182560599

Previous symbols: [ "RGSL2" ]

Links

ENSG00000121446 ∙ NCBI:353299 ∙ OMIM:611012 ∙ HGNC:18636 ∙ Uniprot:A5PLK6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RGSL1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RGSL1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				2		2
missense			56	2		58
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	56	4	0

Variants in RGSL1

This is a list of pathogenic ClinVar variants found in the RGSL1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-182450173-G-A		not specified	Likely benign (Jun 22, 2023)
1-182453973-C-T		not specified	Uncertain significance (Mar 08, 2024)
1-182460011-A-G		not specified	Uncertain significance (Jun 22, 2021)
1-182460020-G-C		not specified	Uncertain significance (Oct 18, 2021)
1-182460047-G-A		not specified	Uncertain significance (Feb 09, 2023)
1-182472456-A-G		not specified	Uncertain significance (May 11, 2022)
1-182472506-A-G		not specified	Uncertain significance (Nov 17, 2022)
1-182472549-T-C		not specified	Uncertain significance (Dec 11, 2023)
1-182472552-A-G		not specified	Uncertain significance (Oct 05, 2022)
1-182473623-G-A		not specified	Uncertain significance (Nov 10, 2022)
1-182473647-A-G		not specified	Uncertain significance (Feb 27, 2023)
1-182473675-C-A		not specified	Uncertain significance (Aug 13, 2021)
1-182473694-T-C		not specified	Uncertain significance (Apr 05, 2023)
1-182473733-T-C		not specified	Uncertain significance (Dec 01, 2022)
1-182473737-A-G		not specified	Uncertain significance (May 14, 2024)
1-182473846-G-A			Likely benign (Apr 01, 2023)
1-182473850-T-G		not specified	Uncertain significance (Dec 22, 2023)
1-182473958-T-C		not specified	Uncertain significance (Oct 20, 2023)
1-182474057-A-C		not specified	Uncertain significance (Aug 12, 2021)
1-182474073-A-G		not specified	Uncertain significance (Jun 10, 2024)
1-182474075-A-G		not specified	Uncertain significance (Feb 01, 2023)
1-182474104-A-C		not specified	Uncertain significance (Apr 25, 2022)
1-182474173-G-T		not specified	Uncertain significance (Jul 26, 2022)
1-182474258-C-A		not specified	Uncertain significance (Dec 08, 2021)
1-182474259-C-T		not specified	Uncertain significance (Apr 08, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RGSL1	protein_coding	protein_coding	ENST00000294854	21	110479

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
2.09e-11	1.00	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.07	407	542	0.750	0.0000276	7194
Missense in Polyphen		89	131.03	0.67924		1883
Synonymous	1.60	164	192	0.853	0.00000962	1895
Loss of Function	3.19	26	50.4	0.515	0.00000232	680

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Pathway: Signaling by GPCR;Signal Transduction;G alpha (i) signalling events;G alpha (z) signalling events;G alpha (q) signalling events;GPCR downstream signalling (Consensus)

Haploinsufficiency Scores

• pHI: 0.157

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	High	Medium	High
Cancer	High	Medium	High

Mouse Genome Informatics

• Gene name: Rgsl1

Gene ontology

• Cellular component: integral component of membrane