RHOG
protein-codingras homolog family member G, the group of Rho family GTPases
Gene summary
This gene encodes a member of the Rho family of small GTPases, which cycle between inactive GDP-bound and active GTP-bound states and function as molecular switches in signal transduction cascades. Rho proteins promote reorganization of the actin cytoskeleton and regulate cell shape, attachment, and motility. The encoded protein facilitates translocation of a functional guanine nucleotide exchange factor (GEF) complex from the cytoplasm to the plasma membrane where ras-related C3 botulinum toxin substrate 1 is activated to promote lamellipodium formation and cell migration. Two related pseudogene have been identified on chromosomes 20 and X. [provided by RefSeq, Aug 2011]
- ARHG
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~14.0 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AR
Disease ID:MONDO:0800147
Submitter: ClinGen
RHOG deficiency was reported in relation to autosomal recessive hemaphagocytic lmphohistiocytosis in 2021 (Kalinichenko et al. PMID: 33513601). This is the only report associated with huma RhoG deficiency. The only proband presented marked cytopenias with low leukocytes and thrombocytes, low hemoglobin, hypertriglyceridemia, raised ferritin, and plasma soluble interleukin-2 receptor. The patient met the eight clinical criteria for HLH with a very early onset of didease (4 months of age). The patient is heterozygous compound for RhoG deficiency. The paternal allele carried a deletion that contains the entire RHOG gene (chr11:3848730-3881730); the maternal allele carries a missense mutation: c.511G>A; p.Glu171Lys. The patient cells showed null expression of RhoG and overexpression of the missense variant confirmed that the expression is severely reduced compared to WT RhoG protein. Experimental evidence includes RhoG expression in relevant tissues such as lymphocytes (Natural Killer cells, T and B lymphocytes), fibroblast. PMID: 35280994. Defective lytic activity and degranulation in NK cells and CD8+ T cells from patient cells. RHOG KO NK-92 Cell lines edited by CRISPcas9 showed that when cells do not express RHOG there is decreased lytic activity and degranulation as seen in patients’ cells. Moreover, RHOG KO mice model showed elevated immunoglobulin levels similar to the human RHOG deficiency. Neither KO mice or Patient T lymphocytes showed affected activation. In summary, RHOG deficiency is moderate associated with autosomal recessive familial hemophagocytic lymphohistiocytosis.
Inheritance Pattern: AR
Disease ID:MONDO:0015541
Submitter: PanelApp Australia
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to RHOG variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_001665.4. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 1 | 1 | 2 | |||
| missense | 15 | 1 | 16 | |||
| nonsense | 0 | |||||
| start loss | 0 | |||||
| frameshift | 0 | |||||
| splice donor/acceptor (+/-2bp) | 0 | |||||
| Total | 0 | 0 | 16 | 2 | 0 | 18 |
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_001656.2 | 1 | MANE Select | |
| Ensembl | ENSP00000339467.4 | 1 | MANE Select | |
| Ensembl | ENSP00000380175.1 | 1 | Standard | |
| Ensembl | ENSP00000380175.1 | 1 | Standard |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Salmonella infection - Homo sapiens (human)
- Bacterial invasion of epithelial cells - Homo sapiens (human)
- Shigellosis - Homo sapiens (human)
- miR-targeted genes in leukocytes - TarBase
- miR-targeted genes in lymphocytes - TarBase
Biological Process
- actin filament organization
- establishment or maintenance of cell polarity
- Rho protein signal transduction
- positive regulation of cell population proliferation
- regulation of cell shape
Molecular Function
- GTPase activity
- protein binding
- GTP binding
- protein kinase binding
- phosphatidylinositol-4,5-bisphosphate 3-kinase activity
Cellular Component
- cytoplasm
- endoplasmic reticulum membrane
- cytosol
- plasma membrane
- focal adhesion
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000351018
- Coding exons
- 1
- Length
- 14006
- Individuals with no LoFs
- 125742
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 2
- Defined
- 125744
- p
- 0.00000795
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 2.49 | 49 | 128 | 0.381 | 0.00000906 | 1225 |
| Missense (PolyPhen) | 16 | 57.178 | 0.27983 | 639 | ||
| Synonymous | -2.44 | 82 | 58.3 | 1.41 | 0.00000460 | 401 |
| Loss of Function | 1.74 | 1 | 5.34 | 0.187 | 2.30e-7 | 59 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0 | 0.0 | absent |
| Latino/Admixed American | 0 | 0.0 | absent |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0.000054 | 0.000054 | rare |
| Finnish | 0 | 0.0 | absent |
| European (Non-Finnish) | 0.0000088 | 0.0000088 | rare |
| South Asian | 0 | 0.0 | absent |
| Other | 0 | 0.0 | absent |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Required for the formation of membrane ruffles during macropinocytosis. Plays a role in cell migration and is required for the formation of cup-like structures during trans-endothelial migration of leukocytes. In case of Salmonella enterica infection, activated by SopB and ARHGEF26/SGEF, which induces cytoskeleton rearrangements and promotes bacterial entry. {ECO:0000269|PubMed:15133129, ECO:0000269|PubMed:17074883, ECO:0000269|PubMed:17875742, ECO:0000269|PubMed:20679435}.;
Recessive Scores
- pRec
- 0.218
Intolerance Scores
- LoFtool
- 0.0878
- RVIS EVS
- 0.04
- RVIS percentile EVS
- 56.64
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.736
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |