RHOG

protein-coding

ras homolog family member G, the group of Rho family GTPases

Gene summary

This gene encodes a member of the Rho family of small GTPases, which cycle between inactive GDP-bound and active GTP-bound states and function as molecular switches in signal transduction cascades. Rho proteins promote reorganization of the actin cytoskeleton and regulate cell shape, attachment, and motility. The encoded protein facilitates translocation of a functional guanine nucleotide exchange factor (GEF) complex from the cytoplasm to the plasma membrane where ras-related C3 botulinum toxin substrate 1 is activated to promote lamellipodium formation and cell migration. Two related pseudogene have been identified on chromosomes 20 and X. [provided by RefSeq, Aug 2011]

Previous symbols:
  • ARHG

MANE transcript

NM_001665.4

Inheritance

AR

ClinVar variants

U:16B:2

Top phenotype

RHOG-related condition

gnomAD constraint

pLI —, LoF o/e 0.19

Max pathogenic AF

—

Genomic locus

chr11:3,826,978-3,840,959

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~14.0 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

hemophagocytic lymphohistiocytosis due to RhoG deficiencyMODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0800147

Submitter: ClinGen

RHOG deficiency was reported in relation to autosomal recessive hemaphagocytic lmphohistiocytosis in 2021 (Kalinichenko et al. PMID: 33513601). This is the only report associated with huma RhoG deficiency. The only proband presented marked cytopenias with low leukocytes and thrombocytes, low hemoglobin, hypertriglyceridemia, raised ferritin, and plasma soluble interleukin-2 receptor. The patient met the eight clinical criteria for HLH with a very early onset of didease (4 months of age). The patient is heterozygous compound for RhoG deficiency. The paternal allele carried a deletion that contains the entire RHOG gene (chr11:3848730-3881730); the maternal allele carries a missense mutation: c.511G>A; p.Glu171Lys. The patient cells showed null expression of RhoG and overexpression of the missense variant confirmed that the expression is severely reduced compared to WT RhoG protein. Experimental evidence includes RhoG expression in relevant tissues such as lymphocytes (Natural Killer cells, T and B lymphocytes), fibroblast. PMID: 35280994. Defective lytic activity and degranulation in NK cells and CD8+ T cells from patient cells. RHOG KO NK-92 Cell lines edited by CRISPcas9 showed that when cells do not express RHOG there is decreased lytic activity and degranulation as seen in patients’ cells. Moreover, RHOG KO mice model showed elevated immunoglobulin levels similar to the human RHOG deficiency. Neither KO mice or Patient T lymphocytes showed affected activation. In summary, RHOG deficiency is moderate associated with autosomal recessive familial hemophagocytic lymphohistiocytosis.

hereditary hemophagocytic lymphohistiocytosisMODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0015541

Submitter: PanelApp Australia

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to RHOG variants in ClinVar

4 Conditions Cataloged
not specifiedTotal: 13
RHOG-related conditionTotal: 2
not providedTotal: 1
Inborn genetic diseasesTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_001665.4. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
1
clinvar
2
missense
15
clinvar
1
clinvar
16
nonsense
0
start loss
0
frameshift
0
splice donor/acceptor (+/-2bp)
0
Total00162018
Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 22 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_001665.4RefSeqNP_001656.21MANE Select
ENST00000351018.5EnsemblENSP00000339467.41MANE Select
ENST00000396978.1EnsemblENSP00000380175.11Standard
ENST00000396978.2EnsemblENSP00000380175.11Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Salmonella infection - Homo sapiens (human)
  • Bacterial invasion of epithelial cells - Homo sapiens (human)
  • Shigellosis - Homo sapiens (human)
  • miR-targeted genes in leukocytes - TarBase
  • miR-targeted genes in lymphocytes - TarBase

Biological Process

  • actin filament organization
  • establishment or maintenance of cell polarity
  • Rho protein signal transduction
  • positive regulation of cell population proliferation
  • regulation of cell shape

Molecular Function

  • GTPase activity
  • protein binding
  • GTP binding
  • protein kinase binding
  • phosphatidylinositol-4,5-bisphosphate 3-kinase activity

Cellular Component

  • cytoplasm
  • endoplasmic reticulum membrane
  • cytosol
  • plasma membrane
  • focal adhesion

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000351018
Coding exons
1
Length
14006
Individuals with no LoFs
125742
Homozygous LoFs
0
Heterozygous LoFs
2
Defined
125744
p
0.00000795
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense2.49491280.3810.000009061225
Missense (PolyPhen)1657.1780.27983639
Synonymous-2.448258.31.410.00000460401
Loss of Function1.7415.340.1872.30e-759

Population LoF Frequency

PopulationCAFp-valueStatus
African00.0absent
Latino/Admixed American00.0absent
Ashkenazi Jewish00.0absent
East Asian0.0000540.000054rare
Finnish00.0absent
European (Non-Finnish)0.00000880.0000088rare
South Asian00.0absent
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Required for the formation of membrane ruffles during macropinocytosis. Plays a role in cell migration and is required for the formation of cup-like structures during trans-endothelial migration of leukocytes. In case of Salmonella enterica infection, activated by SopB and ARHGEF26/SGEF, which induces cytoskeleton rearrangements and promotes bacterial entry. {ECO:0000269|PubMed:15133129, ECO:0000269|PubMed:17074883, ECO:0000269|PubMed:17875742, ECO:0000269|PubMed:20679435}.;

Recessive Scores

pRec
0.218

Intolerance Scores

LoFtool
0.0878
RVIS EVS
0.04
RVIS percentile EVS
56.64

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.736

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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