RHOH

protein-coding

ras homolog family member H, the group of Rho family GTPases

Gene summary

The protein encoded by this gene is a member of the Ras superfamily of guanosine triphosphate (GTP)-metabolizing enzymes. The encoded protein is expressed in hematopoietic cells, where it functions as a negative regulator of cell growth and survival. This gene may be hypermutated or misexpressed in leukemias and lymphomas. Chromosomal translocations in non-Hodgkin's lymphoma occur between this locus and B-cell CLL/lymphoma 6 (BCL6) on chromosome 3, leading to the production of fusion transcripts. Alternative splicing in the 5' untranslated region results in multiple transcript variants that encode the same protein. [provided by RefSeq, May 2013]

Previous symbols:
  • ARHH

MANE transcript

NM_004310.5

Inheritance

AR

ClinVar variants

U:41B:51

Top phenotype

Immunodeficiency 129

gnomAD constraint

pLI —, LoF o/e 0.34

Max pathogenic AF

—

Genomic locus

chr4:40,191,011-40,246,967

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~56.0 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

epidermodysplasia verruciformisMODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0009176

Submitter: Genomics England PanelApp

epidermodysplasia verruciformis, susceptibility to, 4MODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0032666

Submitter: PanelApp Australia

epidermodysplasia verruciformis, susceptibility to, 4LIMITED

Inheritance Pattern: AR

Disease ID:MONDO:0032666

Submitter: G2P

epidermodysplasia verruciformis, susceptibility to, 4MODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0032666

Submitter: ClinGen

*RHOH* (Ras homolog family member H) was first identified in 1995 (Dallery et al., PMID: 7784061) and was reported in relation to autosomal recessive susceptibility to epidermodysplasia verruciformis 4 in 2012 (Crequer et al., PMID: 22850876). *RHOH* encodes an atypical Rho GTPase that is hematopoietic‑restricted and GTPase‑deficient, remaining constitutively in a GTP‑bound state. Unlike canonical Rho GTPases that function as molecular switches downstream of immune receptors, *RHOH* acts as an adaptor/regulatory protein essential for proper T‑cell receptor (TCR) signaling and T‑cell development. To date, two unique homozygous *RHOH* variants have been reported in two affected individuals from consanguineous families across two publications (Crequer et al., 2012, PMID: 22850876; Zhou et al., 2024, PMID: 38775840). Reported variants include a predicted loss‑of‑function nonsense variant (p.Tyr38Ter) and a missense variant (p.Cys82Tyr). Affected individuals presented in childhood with persistent EV‑HPV infections, verrucae, and combined immunodeficiency dominated by T‑cell lymphopenia. Functional studies in patient peripheral blood mononuclear cells demonstrated defective T‑cell activation, with failure to proliferate in response to anti‑CD3 stimulation and partial rescue with costimulation or bypass activation (anti‑CD3 plus anti‑CD28, PHA, or PMA/ionomycin), consistent with impaired proximal TCR signaling (PMID: 22850876; PMID: 38775840). Heterozygous parents of individuals with autosomal‑recessive *RHOH* deficiency are clinically unaffected carriers, showing preserved *RHOH* transcript levels, normal T‑cell viability and activation in anti‑CD3/CD28 stimulation assays, and no evidence of immune dysfunction (Zhou et al., 2024). Experimental evidence supports the biological plausibility of this gene–disease relationship. Expression studies demonstrate that *RHOH* is expressed exclusively in hematopoietic tissues and cell lines, with highest expression in thymus and T lymphocytes, supporting relevance to immune development (Li et al., 2002, PMID: 11809807). Protein interaction studies show that *RHOH* physically associates with key proximal TCR signaling proteins, including LCK and ZAP70, regulating their localization and activation at the plasma membrane (Wang et al., 2010, PMID: 20851766; Zhou et al., 2024, PMID: 38775840). Non‑human model organism studies demonstrate that Rhoh‑/‑ mice exhibit impaired thymocyte development, reduced peripheral CD4⁺ and CD8⁺ T‑cell numbers, and defective TCR signaling, closely paralleling the human phenotype (Gu et al., 2006, PMID: 17028588). Rescue experiments further show that transduction of wild‑type *RHOH* into Rhoh‑/‑ bone marrow cells partially restores T‑cell development, whereas patient‑derived mutant alleles fail to rescue, supporting a loss‑of‑function disease mechanism (PMID: 22850876). In summary, there is moderate evidence to support the relationship between RHOH and autosomal recessive epidermodysplasia verruciformis, susceptibility to, 4. While additional unrelated cases would further strengthen this association, no convincing contradictory evidence has emerged. This gene–disease pair was originally evaluated by the ClinGen SCID‑CID Gene Curation Expert Panel on February 17, 2023, at which time the classification was Limited. It was re‑evaluated on April 16, 2026, with consideration of newly published genetic and functional evidence, including an additional affected individual and supporting functional data (Zhou et al., 2024, PMID: 38775840). As a result of this reevaluation, the classification increased from Limited to Moderate.

epidermodysplasia verruciformis, susceptibility to, 4LIMITED

Inheritance Pattern: AR

Disease ID:MONDO:0032666

Submitter: Ambry Genetics

T-cell immunodeficiency with epidermodysplasia verruciformisSUPPORTIVE

Inheritance Pattern: AR

Disease ID:MONDO:0017925

Submitter: Orphanet

epidermodysplasia verruciformis, susceptibility to, 4STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0032666

Submitter: Labcorp Genetics (formerly Invitae)

Clinical Genomic Database (CGD)

Immunodeficiency 129AR

Manifestation: Allergy/Immunology/Infectious; Dermatologic; Oncologic

Intervention: Allergy/Immunology/Infectious; Oncologic

Rationale: Individuals have been described with susceptibility to certain infections as well as potential increased risk of malignancy, and awareness may allow prompt diagnosis and management of sequeleae

Refs: 22850876Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to RHOH variants in ClinVar

5 Conditions Cataloged
T-cell immunodeficiency with epidermodysplasia verruciformisTotal: 83
not specifiedTotal: 17
not providedTotal: 4
Epidermodysplasia verruciformis, susceptibility to, 4Total: 4
RHOH-related disorderTotal: 2

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_004310.5. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
49
clinvar
1
clinvar
50
missense
37
clinvar
1
clinvar
38
nonsense
2
clinvar
2
start loss
0
frameshift
1
clinvar
1
splice donor/acceptor (+/-2bp)
1
clinvar
1
Total004150192
Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 55 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_004310.5RefSeqNP_004301.11MANE Select
ENST00000381799.10EnsemblENSP00000371219.41MANE Select
NM_001278359.2RefSeqNP_001265288.11Standard
NM_001278360.2RefSeqNP_001265289.11Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Leukocyte transendothelial migration - Homo sapiens (human)
  • Signal Transduction
  • Rho GTPase cycle
  • Signaling by Rho GTPases

Biological Process

  • regulation of transcription, DNA-templated
  • actin filament organization
  • establishment or maintenance of cell polarity
  • Rho protein signal transduction
  • regulation of cell shape

Molecular Function

  • GTPase activity
  • GTPase inhibitor activity
  • protein binding
  • GTP binding
  • Rho GTPase binding

Cellular Component

  • immunological synapse
  • cytoplasm
  • cytosol
  • plasma membrane
  • cell cortex

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000381799
Coding exons
1
Length
55915
Individuals with no LoFs
125737
Homozygous LoFs
0
Heterozygous LoFs
6
Defined
125743
p
0.0000239
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense1.67651150.5630.000006701246
Missense (PolyPhen)2759.2950.45535595
Synonymous-0.7585851.11.140.00000331393
Loss of Function1.4925.920.3383.39e-757

Population LoF Frequency

PopulationCAFp-valueStatus
African0.0000620.000062rare
Latino/Admixed American00.0absent
Ashkenazi Jewish00.0absent
East Asian00.0absent
Finnish00.0absent
European (Non-Finnish)0.0000360.000035rare
South Asian0.0000780.000033rare
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Negative regulator of hematopoietic progenitor cell proliferation, survival and migration. Critical regulator of thymocyte development and T-cell antigen receptor (TCR) signaling by mediating recruitment and activation of ZAP70. Required for phosphorylation of CD3Z, membrane translocation of ZAP70 and subsequent activation of the ZAP70-mediated pathways. Essential for efficient beta-selection and positive selection by promoting the ZAP70-dependent phosphorylation of the LAT signalosome during pre-TCR and TCR signaling. Crucial for thymocyte maturation during DN3 to DN4 transition and during positive selection. Plays critical roles in mast cell function by facilitating phosphorylation of SYK in Fc epsilon RI-mediated signal transduction. Essential for the phosphorylation of LAT, LCP2, PLCG1 and PLCG2 and for Ca(2+) mobilization in mast cells (By similarity). Binds GTP but lacks intrinsic GTPase activity and is resistant to Rho-specific GTPase-activating proteins. Inhibits the activation of NF-kappa-B by TNF and IKKB and the activation of CRK/p38 by TNF. Inhibits activities of RAC1, RHOA and CDC42. Negatively regulates leukotriene production in neutrophils. {ECO:0000250, ECO:0000269|PubMed:11809807, ECO:0000269|PubMed:19414807}.;
Disease
DISEASE: Note=A chromosomal aberration involving RHOH is found in a non-Hodgkin lymphoma cell line. Translocation t(3;4)(q27;p11) with BCL6.;

Recessive Scores

pRec
0.310

Intolerance Scores

LoFtool
0.357
RVIS EVS
-0.27
RVIS percentile EVS
33.97

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
H
Indispensability pred.
E
Indispensability score
0.891

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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