RHOXF1-AS1

RHOXF1 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): X:120036236-120146855

Links

ENSG00000258545NCBI:101928969HGNC:51582GenCCjaxSfariGnomADPubmedClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RHOXF1-AS1 gene.

  • Inborn genetic diseases (7 variants)
  • not provided (5 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RHOXF1-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type Pathogenic Likely pathogenic VUS Likely benign Benign Sum
synonymous
0
missense
0
nonsense
0
start loss
0
frameshift
0
inframe indel
0
splice donor/acceptor (+/-2bp)
0
splice region
0
non coding
7
clinvar
3
clinvar
2
clinvar
12
Total 0 0 7 3 2

Variants in RHOXF1-AS1

This is a list of pathogenic ClinVar variants found in the RHOXF1-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position Type Phenotype Significance ClinVar
X-120075904-A-C not specified Uncertain significance (Aug 23, 2021)2381338
X-120076957-G-A Likely benign (May 01, 2022)2661312
X-120076964-T-G not specified Uncertain significance (Dec 28, 2023)3154128
X-120077108-C-T not specified Uncertain significance (Nov 29, 2023)3154127
X-120077118-C-T not specified Uncertain significance (Apr 28, 2022)2390849
X-120077121-C-T not specified Uncertain significance (Apr 25, 2023)2561795
X-120077122-GCCGCCGCCATCTTTTTCTTCT-G Likely benign (Apr 01, 2023)2661313
X-120077124-C-T Likely benign (Feb 01, 2023)2661314
X-120077148-C-T not specified Uncertain significance (Dec 21, 2023)3154126
X-120077217-C-T not specified Uncertain significance (Mar 19, 2024)3314251
X-120077267-G-A not specified Uncertain significance (Mar 19, 2024)3314250
X-120109203-C-T not specified Likely benign (Mar 05, 2024)3154122
X-120109219-G-T not specified Uncertain significance (Oct 02, 2023)3154121
X-120109232-C-T Benign (Dec 31, 2019)715990
X-120109268-C-T not specified Uncertain significance (Dec 28, 2023)3154120
X-120109275-A-G not specified Uncertain significance (Sep 14, 2022)2311725
X-120112897-T-G not specified Uncertain significance (May 01, 2024)3314248
X-120115468-G-T not specified Uncertain significance (Sep 23, 2023)3154119
X-120115580-C-T not specified Uncertain significance (Feb 15, 2023)2483935
X-120115635-C-T Benign (Dec 31, 2019)777826
X-120115667-T-C not specified Likely benign (Dec 22, 2023)3154118
X-120115729-A-G not specified Uncertain significance (Jul 09, 2021)2207467
X-120115834-A-G not specified Uncertain significance (Nov 12, 2021)2352813

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP