RLN3

relaxin 3, the group of Neuropeptides

Basic information

Region (hg38): 19:14028148-14031551

Links

ENSG00000171136 ∙ NCBI:117579 ∙ OMIM:606855 ∙ HGNC:17135 ∙ Uniprot:Q8WXF3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RLN3 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RLN3 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			9	2		11
nonsense			1	1		2
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	10	3	0

Variants in RLN3

This is a list of pathogenic ClinVar variants found in the RLN3 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-14028236-C-T		not specified	Uncertain significance (Dec 26, 2023)
19-14028266-C-T		not specified	Likely benign (Dec 21, 2023)
19-14028292-T-C			Likely benign (Feb 13, 2018)
19-14028325-C-T			Likely benign (Jun 08, 2018)
19-14028370-G-C		not specified	Uncertain significance (Mar 11, 2022)
19-14028383-A-G		not specified	Uncertain significance (Aug 21, 2023)
19-14028385-G-A		not specified	Uncertain significance (Jan 10, 2022)
19-14030743-A-G		not specified	Uncertain significance (Mar 01, 2023)
19-14030755-G-A		not specified	Uncertain significance (Oct 06, 2021)
19-14030764-A-G		not specified	Uncertain significance (Mar 01, 2024)
19-14030806-C-A			Uncertain significance (Jan 01, 2019)
19-14030874-G-C		not specified	Uncertain significance (Jan 18, 2023)
19-14030881-T-C		not specified	Uncertain significance (Nov 28, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RLN3	protein_coding	protein_coding	ENST00000431365	2	2895

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0134	0.682	125553	0	83	125636	0.000330

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.160	95	90.7	1.05	0.00000559	897
Missense in Polyphen		26	28.752	0.90427		306
Synonymous	1.24	30	40.0	0.751	0.00000259	310
Loss of Function	0.569	3	4.27	0.703	3.67e-7	29

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00419	0.00419
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000881	0.0000880
Middle Eastern	0.00	0.00
South Asian	0.0000658	0.0000653
Other	0.000327	0.000326

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May play a role in neuropeptide signaling processes. Ligand for LGR7, relaxin-3 receptor-1 (GPCR135) and relaxin-3 receptor-2 (GPCR142).
• Pathway: Relaxin signaling pathway - Homo sapiens (human);Signaling by GPCR;Signal Transduction;G alpha (s) signalling events;Relaxin receptors;Peptide ligand-binding receptors;Class A/1 (Rhodopsin-like receptors);GPCR ligand binding;G alpha (i) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.111

Intolerance Scores

• loftool: 0.548
• rvis_EVS: 0.57
• rvis_percentile_EVS: 81.99

Haploinsufficiency Scores

• pHI: 0.142
• hipred: N
• hipred_score: 0.208

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.564

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rln3
• Phenotype: growth/size/body region phenotype; integument phenotype (the observable morphological and physiological characteristics of the skin and its associated structures, such as the hair, nails, sweat glands, sebaceous glands and other secretory glands that are manifested through development and lifespan); adipose tissue phenotype (the observable morphological and physiological characteristics of mammalian fat tissue that are manifested through development and lifespan); homeostasis/metabolism phenotype; skeleton phenotype; behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); pigmentation phenotype; nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan)

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway;regulation of signaling receptor activity
• Cellular component: extracellular region
• Molecular function: G protein-coupled receptor binding;hormone activity;protein binding