RNF114

ring finger protein 114, the group of Ring finger proteins

Basic information

Region (hg38): 20:49936336-49953885

Previous symbols: [ "ZNF313" ]

Links

ENSG00000124226 ∙ NCBI:55905 ∙ OMIM:612451 ∙ HGNC:13094 ∙ Uniprot:Q9Y508 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RNF114 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RNF114 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			15	2		17
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	15	2	0

Variants in RNF114

This is a list of pathogenic ClinVar variants found in the RNF114 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
20-49936427-G-C		not specified	Uncertain significance (Nov 14, 2023)
20-49936432-A-C		not specified	Uncertain significance (Aug 07, 2024)
20-49936435-G-T		not specified	Uncertain significance (Jan 20, 2025)
20-49936455-G-A		not specified	Uncertain significance (Dec 21, 2022)
20-49936462-C-T		not specified	Uncertain significance (Jul 02, 2024)
20-49936480-C-T		not specified	Uncertain significance (Jan 23, 2024)
20-49936488-C-T		not specified	Uncertain significance (Nov 13, 2024)
20-49941604-C-G		not specified	Uncertain significance (Apr 07, 2023)
20-49941665-G-T		not specified	Uncertain significance (Mar 16, 2022)
20-49945392-C-G		not specified	Uncertain significance (Jan 29, 2024)
20-49946177-C-T		not specified	Uncertain significance (Oct 01, 2024)
20-49949271-G-C		not specified	Uncertain significance (Feb 08, 2025)
20-49949288-A-C		not specified	Uncertain significance (Jun 11, 2024)
20-49949294-G-A			Likely benign (Dec 01, 2022)
20-49949299-G-A		not specified	Uncertain significance (Feb 23, 2023)
20-49949324-G-A		not specified	Uncertain significance (Feb 28, 2023)
20-49949333-G-A		not specified	Likely benign (Jan 31, 2023)
20-49952105-G-A		not specified	Uncertain significance (Aug 31, 2022)
20-49952121-C-T		not specified	Uncertain significance (Jul 12, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RNF114	protein_coding	protein_coding	ENST00000244061	6	17482

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0521	0.929	125744	0	4	125748	0.0000159

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.03	105	139	0.754	0.00000855	1469
Missense in Polyphen		20	53.409	0.37447		581
Synonymous	-0.125	53	51.9	1.02	0.00000313	420
Loss of Function	2.05	4	11.5	0.348	5.71e-7	139

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.0000266	0.0000264
Middle Eastern	0.0000544	0.0000544
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: E3 ubiquitin-protein ligase promoting the ubiquitination and degradation of the CDK inhibitor CDKN1A and probably also CDKN1B and CDKN1C. These activities stimulate cell cycle's G1-to-S phase transition and suppress cellular senescence. May play a role in spermatogenesis. {ECO:0000269|PubMed:23645206}.
• Pathway: Immune System;Adaptive Immune System;Antigen processing: Ubiquitination & Proteasome degradation;Class I MHC mediated antigen processing & presentation (Consensus)

Recessive Scores

• pRec: 0.111

Intolerance Scores

• loftool: 0.370
• rvis_EVS: 0.48
• rvis_percentile_EVS: 79.04

Haploinsufficiency Scores

• pHI: 0.484
• hipred: Y
• hipred_score: 0.716
• ghis: 0.419

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.801

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rnf114

Gene ontology

• Biological process: protein polyubiquitination;multicellular organism development;spermatogenesis;cell differentiation
• Cellular component: nucleus;cytosol;plasma membrane
• Molecular function: ubiquitin-protein transferase activity;metal ion binding