RNF121

ring finger protein 121, the group of Ring finger proteins

Basic information

Region (hg38): 11:71929017-71997597

Links

ENSG00000137522 ∙ NCBI:55298 ∙ ∙ HGNC:21070 ∙ Uniprot:Q9H920 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RNF121 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RNF121 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			12			12
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			2			2
Total	0	0	14	0	1

Variants in RNF121

This is a list of pathogenic ClinVar variants found in the RNF121 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-71929066-C-T		not specified	Uncertain significance (Dec 19, 2022)
11-71929079-G-T		not specified	Uncertain significance (Aug 02, 2021)
11-71929099-C-T		not specified	Uncertain significance (Dec 03, 2021)
11-71960776-A-G		not specified	Uncertain significance (Feb 13, 2024)
11-71960782-G-A		not specified	Uncertain significance (Dec 16, 2023)
11-71960841-G-A		not specified	Uncertain significance (Jul 09, 2021)
11-71960881-G-A		not specified	Uncertain significance (Jul 19, 2023)
11-71982909-C-T		not specified	Uncertain significance (Oct 29, 2021)
11-71987068-A-G		not specified	Uncertain significance (Jun 04, 2024)
11-71987077-A-G		not specified	Uncertain significance (May 08, 2024)
11-71990655-T-C		not specified	Uncertain significance (Jan 03, 2022)
11-71990671-G-A		not specified	Uncertain significance (Jul 09, 2021)
11-71990674-A-T		not specified	Uncertain significance (Feb 13, 2024)
11-71990686-T-A		not specified	Uncertain significance (Mar 24, 2023)
11-71990705-A-G			Benign (Jun 18, 2018)
11-71994750-A-G		not specified	Uncertain significance (Oct 25, 2022)
11-71995500-C-T		not specified	Uncertain significance (Sep 07, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RNF121	protein_coding	protein_coding	ENST00000361756	9	68897

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.319	0.681	125742	0	2	125744	0.00000795

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.39	137	191	0.717	0.0000102	2151
Missense in Polyphen		53	77.643	0.68261		924
Synonymous	0.653	62	68.9	0.900	0.00000394	609
Loss of Function	3.31	5	21.6	0.232	0.00000125	217

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.0000518	0.0000462
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.116

Intolerance Scores

• loftool: 0.188
• rvis_EVS: -0.49
• rvis_percentile_EVS: 22.09

Haploinsufficiency Scores

• pHI: 0.866
• hipred: Y
• hipred_score: 0.591
• ghis: 0.648

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.757

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rnf121

Zebrafish Information Network

• Gene name: rnf121
• Affected structure: Rohon-Beard neuron
• Phenotype tag: abnormal
• Phenotype quality: action potential

Gene ontology

• Biological process: protein ubiquitination;ubiquitin-dependent ERAD pathway;endoplasmic reticulum unfolded protein response
• Cellular component: Golgi membrane;endoplasmic reticulum membrane;integral component of membrane
• Molecular function: metal ion binding;ubiquitin protein ligase activity