RNF145

ring finger protein 145, the group of Ring finger proteins

Basic information

Region (hg38): 5:159157409-159210053

Links

ENSG00000145860 ∙ NCBI:153830 ∙ ∙ HGNC:20853 ∙ Uniprot:Q96MT1 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RNF145 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RNF145 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			15	1		16
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	15	1	0

Variants in RNF145

This is a list of pathogenic ClinVar variants found in the RNF145 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
5-159158683-A-T		not specified	Uncertain significance (Apr 13, 2022)
5-159158704-G-T		not specified	Uncertain significance (Aug 08, 2023)
5-159158710-T-G		not specified	Uncertain significance (Jan 02, 2024)
5-159158734-G-A		not specified	Likely benign (Jan 19, 2022)
5-159158755-C-A		not specified	Uncertain significance (Apr 18, 2023)
5-159158773-T-C		not specified	Uncertain significance (Apr 15, 2024)
5-159158785-G-C		not specified	Uncertain significance (Oct 26, 2022)
5-159158885-G-C		not specified	Uncertain significance (Apr 28, 2022)
5-159161595-A-T		not specified	Uncertain significance (Aug 08, 2022)
5-159168925-T-C		not specified	Uncertain significance (Oct 26, 2022)
5-159168957-A-C		not specified	Uncertain significance (Jan 03, 2024)
5-159174014-G-A		not specified	Uncertain significance (Feb 01, 2023)
5-159174158-C-T		not specified	Uncertain significance (Dec 19, 2023)
5-159176738-T-C		not specified	Uncertain significance (Jun 21, 2022)
5-159176742-T-G		not specified	Uncertain significance (Jun 06, 2022)
5-159203649-G-A		not specified	Uncertain significance (May 11, 2022)
5-159209857-A-C		not specified	Uncertain significance (Feb 28, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RNF145	protein_coding	protein_coding	ENST00000518802	11	52645

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.980	0.0197	125738	0	5	125743	0.0000199

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	3.59	171	364	0.470	0.0000182	4522
Missense in Polyphen		33	148.09	0.22283		1846
Synonymous	-0.340	141	136	1.04	0.00000689	1349
Loss of Function	4.36	4	29.6	0.135	0.00000147	374

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000651	0.0000615
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.0000477	0.0000462
European (Non-Finnish)	0.0000177	0.0000176
Middle Eastern	0.00	0.00
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: E3 ubiquitin ligase that catalyzes the direct transfer of ubiquitin from E2 ubiquitin-conjugating enzyme to a specific substrate. In response to bacterial infection, negatively regulates the phagocyte oxidative burst by controlling the turnover of the NADPH oxidase complex subunits. Promotes monoubiquitination of CYBA and 'Lys-48'-linked polyubiquitination and degradation of CYBB NADPH oxidase catalytic subunits, both essential for the generation of antimicrobial reactive oxygen species. Involved in the maintenance of cholesterol homeostasis. In response to high sterol concentrations ubiquitinates HMGCR, a rate-limiting enzyme in cholesterol biosynthesis, and targets it for degradation. The interaction with INSIG1 is required for this function. In addition, triggers ubiquitination of SCAP, likely inhibiting its transport to the Golgi apparatus and the subsequent processing/maturation of SREBPF2, ultimately downregulating cholesterol biosynthesis. {ECO:0000250|UniProtKB:Q5SWK7}.

Intolerance Scores

• loftool: 0.390
• rvis_EVS: -0.74
• rvis_percentile_EVS: 13.94

Haploinsufficiency Scores

• pHI: 0.339
• hipred: Y
• hipred_score: 0.685
• ghis: 0.572

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.134

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rnf145

Zebrafish Information Network

• Gene name: rnf145b
• Affected structure: myeloid cell development
• Phenotype tag: abnormal
• Phenotype quality: absent

Gene ontology

• Cellular component: endoplasmic reticulum;endoplasmic reticulum membrane;endomembrane system;integral component of membrane
• Molecular function: zinc ion binding;transferase activity;ubiquitin protein ligase activity