RNF167

ring finger protein 167, the group of Ring finger proteins

Basic information

Region (hg38): 17:4940008-4945222

Links

ENSG00000108523 ∙ NCBI:26001 ∙ OMIM:610431 ∙ HGNC:24544 ∙ Uniprot:Q9H6Y7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RNF167 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RNF167 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			22		1	23
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region					1	1
non coding					1	1
Total	0	0	22	0	2

Variants in RNF167

This is a list of pathogenic ClinVar variants found in the RNF167 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
17-4940913-C-T		not specified	Uncertain significance (Sep 27, 2021)
17-4940947-C-T			Benign (Aug 08, 2017)
17-4940973-A-C		not specified	Uncertain significance (Nov 07, 2022)
17-4941090-A-G		not specified	Uncertain significance (May 21, 2024)
17-4941132-C-G		not specified	Uncertain significance (Apr 01, 2024)
17-4941149-G-A		not specified	Uncertain significance (Oct 17, 2023)
17-4941166-C-T			Benign (Aug 08, 2017)
17-4942389-C-T		not specified	Uncertain significance (May 09, 2024)
17-4942405-C-T		not specified	Uncertain significance (Jun 05, 2023)
17-4942429-C-T		not specified	Uncertain significance (Feb 10, 2022)
17-4942445-C-G		not specified	Uncertain significance (Feb 13, 2023)
17-4942461-C-T		not specified	Uncertain significance (Feb 10, 2022)
17-4942473-G-A			Benign (Apr 20, 2020)
17-4942605-G-A		not specified	Uncertain significance (Dec 16, 2021)
17-4942890-T-C		not specified	Uncertain significance (Mar 22, 2023)
17-4942922-C-T		not specified	Uncertain significance (Oct 25, 2022)
17-4943184-G-A		not specified	Uncertain significance (Mar 02, 2023)
17-4943205-A-G		not specified	Uncertain significance (Oct 03, 2022)
17-4943241-C-T		not specified	Uncertain significance (Oct 26, 2022)
17-4943270-A-G		not specified	Uncertain significance (Dec 21, 2022)
17-4943432-C-T		not specified	Uncertain significance (Oct 26, 2021)
17-4943462-C-T		not specified	Uncertain significance (Dec 22, 2023)
17-4943463-G-A		not specified	Uncertain significance (Jan 26, 2022)
17-4944611-A-G		not specified	Uncertain significance (Jun 03, 2022)
17-4944632-G-A		not specified	Uncertain significance (Jun 17, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RNF167	protein_coding	protein_coding	ENST00000262482	9	5215

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0321	0.966	125712	0	36	125748	0.000143

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.0408	210	208	1.01	0.0000115	2256
Missense in Polyphen		43	66.194	0.64961		714
Synonymous	-0.943	90	79.3	1.13	0.00000414	736
Loss of Function	2.75	6	18.9	0.317	9.42e-7	193

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000119	0.000119
Ashkenazi Jewish	0.00	0.00
East Asian	0.000163	0.000163
Finnish	0.00	0.00
European (Non-Finnish)	0.000220	0.000220
Middle Eastern	0.000163	0.000163
South Asian	0.000131	0.000131
Other	0.000165	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May act as an E3 ubiquitin-protein ligase, or as part of the E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, such as UBE2E1, and then transfers it to substrates, such as SLC22A18. May play a role in growth regulation involved in G1/S transition. {ECO:0000269|PubMed:16314844}.

Recessive Scores

• pRec: 0.114

Intolerance Scores

• loftool: 0.732
• rvis_EVS: -0.36
• rvis_percentile_EVS: 29.16

Haploinsufficiency Scores

• pHI: 0.614
• hipred: Y
• hipred_score: 0.736
• ghis: 0.557

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.931

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rnf167

Gene ontology

• Biological process: protein polyubiquitination;ubiquitin-dependent protein catabolic process;negative regulation of cell cycle
• Cellular component: cytoplasm;endomembrane system;integral component of membrane
• Molecular function: ubiquitin-protein transferase activity;protein binding;zinc ion binding;ubiquitin protein ligase activity