RNF186

ring finger protein 186, the group of Ring finger proteins

Basic information

Region (hg38): 1:19814029-19815283

Links

ENSG00000178828 ∙ NCBI:54546 ∙ OMIM:617163 ∙ HGNC:25978 ∙ Uniprot:Q9NXI6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RNF186 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RNF186 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			26	3		29
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	26	3	0

Variants in RNF186

This is a list of pathogenic ClinVar variants found in the RNF186 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-19814423-C-T		not specified	Uncertain significance (Oct 12, 2022)
1-19814449-T-C		not specified	Uncertain significance (Nov 18, 2022)
1-19814458-C-A		not specified	Uncertain significance (Apr 07, 2022)
1-19814494-C-T		not specified	Likely benign (Jul 19, 2022)
1-19814495-G-A		not specified	Uncertain significance (Mar 29, 2023)
1-19814542-G-A		not specified	Uncertain significance (Jul 25, 2023)
1-19814566-C-T		not specified	Uncertain significance (Dec 12, 2022)
1-19814578-G-A		not specified	Uncertain significance (Mar 30, 2022)
1-19814585-T-G		not specified	Uncertain significance (Jun 07, 2024)
1-19814587-A-T		not specified	Uncertain significance (Jun 06, 2023)
1-19814632-G-A		not specified	Likely benign (Jul 19, 2022)
1-19814633-C-T		not specified	Uncertain significance (Feb 28, 2023)
1-19814641-C-T		not specified	Uncertain significance (Dec 18, 2023)
1-19814645-G-A		not specified	Uncertain significance (Dec 22, 2023)
1-19814657-G-T		not specified	Uncertain significance (Oct 27, 2022)
1-19814703-G-T		not specified	Uncertain significance (Nov 08, 2022)
1-19814722-G-A		not specified	Uncertain significance (Jan 22, 2024)
1-19814726-G-A		not specified	Uncertain significance (Mar 07, 2024)
1-19814732-C-T		not specified	Uncertain significance (Jan 10, 2022)
1-19814744-G-T		not specified	Uncertain significance (Oct 06, 2021)
1-19814764-C-T		not specified	Uncertain significance (Feb 06, 2023)
1-19814804-G-A		not specified	Uncertain significance (Jul 05, 2023)
1-19814819-G-A		not specified	Uncertain significance (Dec 22, 2023)
1-19814897-G-A		not specified	Uncertain significance (Nov 09, 2023)
1-19814907-G-C		not specified	Uncertain significance (Jul 25, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RNF186	protein_coding	protein_coding	ENST00000375121	1	1249

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0826	0.769	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.156	142	137	1.04	0.00000859	1430
Missense in Polyphen		43	41.213	1.0434		469
Synonymous	-1.38	77	63.0	1.22	0.00000396	522
Loss of Function	1.06	2	4.40	0.454	1.91e-7	51

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: E3 ubiquitin protein ligase that is part of an apoptotic signaling pathway activated by endoplasmic reticulum stress (PubMed:23896122). In that process, stimulates the expression of proteins specific of the unfolded protein response (UPR), ubiquitinates BNIP1 and regulates its localization to the mitochondrion and induces calcium release from the endoplasmic reticulum that ultimately leads to cell apoptosis (PubMed:23896122). {ECO:0000269|PubMed:23896122}.

Recessive Scores

• pRec: 0.0983

Intolerance Scores

• loftool: 0.616
• rvis_EVS: 0.69
• rvis_percentile_EVS: 85.1

Haploinsufficiency Scores

• pHI: 0.0845
• hipred: N
• hipred_score: 0.146

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.760

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rnf186

Gene ontology

• Biological process: protein K29-linked ubiquitination;proteasome-mediated ubiquitin-dependent protein catabolic process;protein autoubiquitination;intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress;protein K63-linked ubiquitination;protein localization to mitochondrion
• Cellular component: endoplasmic reticulum membrane;integral component of membrane
• Molecular function: ubiquitin-protein transferase activity;protein binding;metal ion binding;ubiquitin protein ligase activity