RNF208

ring finger protein 208, the group of Ring finger proteins

Basic information

Region (hg38): 9:137220247-137222240

Links

ENSG00000212864 ∙ NCBI:727800 ∙ OMIM:618993 ∙ HGNC:25420 ∙ Uniprot:Q9H0X6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RNF208 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RNF208 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			16			16
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	16	0	0

Variants in RNF208

This is a list of pathogenic ClinVar variants found in the RNF208 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
9-137220444-C-T		not specified	Uncertain significance (Jul 14, 2021)
9-137220454-G-T		not specified	Uncertain significance (May 26, 2022)
9-137220531-C-T		not specified	Uncertain significance (Nov 22, 2021)
9-137220614-C-T		not specified	Uncertain significance (Mar 07, 2024)
9-137220642-G-C		not specified	Uncertain significance (Jun 07, 2023)
9-137220644-C-A		not specified	Uncertain significance (Oct 05, 2021)
9-137220801-C-T		not specified	Uncertain significance (May 26, 2024)
9-137220809-G-A		not specified	Uncertain significance (Oct 06, 2023)
9-137220812-G-A		not specified	Uncertain significance (Jul 20, 2021)
9-137220824-G-A		not specified	Uncertain significance (Sep 01, 2021)
9-137220843-G-A		not specified	Uncertain significance (May 15, 2024)
9-137220882-C-A		not specified	Uncertain significance (Mar 31, 2024)
9-137220887-C-T		not specified	Uncertain significance (Jul 26, 2022)
9-137220918-G-A		not specified	Uncertain significance (May 21, 2024)
9-137220926-C-T		not specified	Uncertain significance (Oct 25, 2022)
9-137220930-G-T		not specified	Uncertain significance (Oct 25, 2023)
9-137220932-A-T		not specified	Uncertain significance (Nov 21, 2022)
9-137221119-C-T		not specified	Uncertain significance (Jun 11, 2021)
9-137221196-C-A		not specified	Uncertain significance (Dec 21, 2023)
9-137221209-G-A		not specified	Uncertain significance (Aug 02, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RNF208	protein_coding	protein_coding	ENST00000392827	1	1327

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.830	0.167	124653	0	3	124656	0.0000120

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.24	120	165	0.728	0.0000113	1613
Missense in Polyphen		40	74.749	0.53513		775
Synonymous	-1.88	99	77.9	1.27	0.00000593	577
Loss of Function	2.24	0	5.83	0.00	2.50e-7	69

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000546	0.0000545
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.0000546	0.0000545
South Asian	0.0000353	0.0000327
Other	0.000173	0.000165

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.110

Intolerance Scores

• rvis_EVS: -0.05
• rvis_percentile_EVS: 49.76

Haploinsufficiency Scores

• pHI: 0.415
• hipred: N
• hipred_score: 0.231
• ghis: 0.564

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.307

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rnf208

Gene ontology

• Biological process: protein autoubiquitination
• Cellular component: nucleoplasm;cytosol
• Molecular function: ubiquitin-protein transferase activity;protein binding;metal ion binding