RPL36
Basic information
Region (hg38): 19:5674947-5691875
Links
Phenotypes
GenCC
Source:
ClinVar
This is a list of variants' phenotypes submitted to
Variants pathogenicity by type
Statistics on ClinVar variants can assist in determining whether a specific variant type in the RPL36 gene is commonly pathogenic or not.
In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.
Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.
Variant type | Pathogenic | Likely pathogenic | VUS | Likely benign | Benign | Sum |
---|---|---|---|---|---|---|
synonymous | 0 | |||||
missense | 2 | |||||
nonsense | 0 | |||||
start loss | 0 | |||||
frameshift | 0 | |||||
inframe indel | 0 | |||||
splice donor/acceptor (+/-2bp) | 0 | |||||
splice region | 0 | |||||
non coding | 0 | |||||
Total | 0 | 0 | 2 | 0 | 0 |
Variants in RPL36
This is a list of pathogenic ClinVar variants found in the RPL36 region.
You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.
Position | Type | Phenotype | Significance | ClinVar |
---|---|---|---|---|
19-5675985-G-A | Benign (Nov 01, 2022) | |||
19-5678594-T-C | Inborn genetic diseases | Uncertain significance (Jun 11, 2021) | ||
19-5678601-G-C | Inborn genetic diseases | Uncertain significance (Jan 12, 2022) | ||
19-5678617-C-T | Likely benign (Apr 28, 2022) | |||
19-5678620-C-T | Likely benign (Dec 11, 2023) | |||
19-5678646-T-C | Likely benign (Mar 01, 2024) | |||
19-5678647-GC-G | Conflicting classifications of pathogenicity (Mar 19, 2024) | |||
19-5678650-T-C | Combined oxidative phosphorylation deficiency 37 | Pathogenic (Nov 01, 2019) | ||
19-5678663-C-T | Likely benign (Oct 24, 2022) | |||
19-5679338-G-T | Likely benign (Oct 24, 2022) | |||
19-5679399-G-T | Uncertain significance (Jul 06, 2022) | |||
19-5679401-GAA-G | MICOS13-related disorder | Benign (Dec 11, 2023) | ||
19-5679416-A-C | Likely benign (Nov 12, 2022) | |||
19-5679567-C-T | Likely benign (Nov 17, 2023) | |||
19-5679642-CG-C | Combined oxidative phosphorylation deficiency 37 | Conflicting classifications of pathogenicity (Feb 09, 2024) | ||
19-5679646-G-C | Likely benign (Jan 31, 2023) | |||
19-5679657-C-T | Uncertain significance (Jun 21, 2022) | |||
19-5679715-G-T | Inborn genetic diseases | Likely pathogenic (Aug 27, 2021) | ||
19-5679718-C-T | Likely benign (Jul 15, 2022) | |||
19-5679730-G-A | Likely benign (Jan 12, 2024) | |||
19-5679739-A-T | MICOS13-related disorder | Likely benign (Jul 13, 2022) | ||
19-5679743-A-G | Uncertain significance (Oct 03, 2023) | |||
19-5679748-TC-T | Mitochondrial hepato-encephalopathy • Combined oxidative phosphorylation deficiency 37 | Conflicting classifications of pathogenicity (Feb 22, 2019) | ||
19-5679764-C-T | Combined oxidative phosphorylation deficiency 37 | Pathogenic (Feb 22, 2019) | ||
19-5680090-G-A | MICOS13-related disorder | Likely benign (Oct 27, 2022) |
GnomAD
Source:
Gene | Type | Bio Type | Transcript | Coding Exons | Length |
---|---|---|---|---|---|
RPL36 | protein_coding | protein_coding | ENST00000577222 | 3 | 16930 |
pLI Probability LOF Intolerant | pRec Probability LOF Recessive | Individuals with no LOFs | Individuals with Homozygous LOFs | Individuals with Heterozygous LOFs | Defined | p |
---|---|---|---|---|---|---|
0.678 | 0.304 | 0 | 0 | 0 | 0 | 0.00 |
Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible in Transcript | |
---|---|---|---|---|---|---|
Missense | 1.19 | 34 | 59.9 | 0.568 | 0.00000288 | 677 |
Missense in Polyphen | 1 | 4.6554 | 0.21481 | 88 | ||
Synonymous | -1.67 | 36 | 25.3 | 1.42 | 0.00000118 | 208 |
Loss of Function | 1.78 | 0 | 3.70 | 0.00 | 1.60e-7 | 47 |
LoF frequencies by population
Ethnicity | Sum of pLOFs | p |
---|---|---|
African & African-American | 0.00 | 0.00 |
Ashkenazi Jewish | 0.00 | 0.00 |
East Asian | 0.00 | 0.00 |
Finnish | 0.00 | 0.00 |
European (Non-Finnish) | 0.00 | 0.00 |
Middle Eastern | 0.00 | 0.00 |
South Asian | 0.00 | 0.00 |
Other | 0.00 | 0.00 |
dbNSFP
Source:
- Function
- FUNCTION: Component of the large ribosomal subunit. {ECO:0000269|PubMed:23636399, ECO:0000269|PubMed:25901680, ECO:0000269|PubMed:25957688, ECO:0000305|PubMed:12962325}.;
- Pathway
- Ribosome - Homo sapiens (human);Cytoplasmic Ribosomal Proteins;SRP-dependent cotranslational protein targeting to membrane;Eukaryotic Translation Initiation;Eukaryotic Translation Termination;Translation;Selenocysteine synthesis;Metabolism of proteins;Metabolism of amino acids and derivatives;Metabolism of RNA;Formation of a pool of free 40S subunits;Metabolism;Nonsense-Mediated Decay (NMD);Selenoamino acid metabolism;Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC);Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC);L13a-mediated translational silencing of Ceruloplasmin expression;Peptide chain elongation;Eukaryotic Translation Elongation;GTP hydrolysis and joining of the 60S ribosomal subunit;Cap-dependent Translation Initiation
(Consensus)
Recessive Scores
- pRec
- 0.151
Intolerance Scores
- loftool
- rvis_EVS
- 0.04
- rvis_percentile_EVS
- 56.25
Haploinsufficiency Scores
- pHI
- 0.149
- hipred
- Y
- hipred_score
- 0.800
- ghis
- 0.628
Essentials
- essential_gene_CRISPR
- E
- essential_gene_CRISPR2
- S
- essential_gene_gene_trap
- H
- gene_indispensability_pred
- E
- gene_indispensability_score
- 0.980
Gene Damage Prediction
All | Recessive | Dominant | |
---|---|---|---|
Mendelian | Medium | Low | Medium |
Primary Immunodeficiency | Medium | Low | Medium |
Cancer | Medium | Medium | Medium |
Mouse Genome Informatics
- Gene name
- Rpl36
- Phenotype
Zebrafish Information Network
- Gene name
- rpl36
- Affected structure
- trunk
- Phenotype tag
- abnormal
- Phenotype quality
- decreased thickness
Gene ontology
- Biological process
- nuclear-transcribed mRNA catabolic process, nonsense-mediated decay;cytoplasmic translation;translation;translational initiation;SRP-dependent cotranslational protein targeting to membrane
- Cellular component
- nucleolus;cytoplasm;cytosol;membrane;cytosolic large ribosomal subunit;polysomal ribosome
- Molecular function
- RNA binding;structural constituent of ribosome