RPRM

reprimo, TP53 dependent G2 arrest mediator homolog

Basic information

Region (hg38): 2:153477338-153478762

Links

ENSG00000177519 ∙ NCBI:56475 ∙ OMIM:612171 ∙ HGNC:24201 ∙ Uniprot:Q9NS64 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RPRM gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RPRM gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			3			3
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	3	0	0

Variants in RPRM

This is a list of pathogenic ClinVar variants found in the RPRM region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-153478250-C-T		not specified	Uncertain significance (Aug 20, 2024)
2-153478403-G-T		not specified	Uncertain significance (Nov 08, 2024)
2-153478416-G-C		not specified	Uncertain significance (Nov 08, 2022)
2-153478489-G-A		not specified	Uncertain significance (Aug 10, 2021)
2-153478510-C-T		not specified	Uncertain significance (Feb 28, 2024)
2-153478517-C-G		not specified	Uncertain significance (Sep 25, 2024)
2-153478532-C-T		not specified	Uncertain significance (May 29, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RPRM	protein_coding	protein_coding	ENST00000325926	1	1471

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.149	0.646	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.564	56	69.2	0.809	0.00000309	700
Missense in Polyphen		15	20.079	0.74704		177
Synonymous	0.0776	32	32.6	0.983	0.00000154	238
Loss of Function	0.676	1	2.04	0.490	8.65e-8	20

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in the regulation of p53-dependent G2 arrest of the cell cycle. Seems to induce cell cycle arrest by inhibiting CDK1 activity and nuclear translocation of the CDC2 cyclin B1 complex (By similarity). {ECO:0000250}.
• Pathway: p53 signaling pathway - Homo sapiens (human) (Consensus)

Recessive Scores

• pRec: 0.163

Intolerance Scores

• loftool: 0.190
• rvis_EVS: 0.04
• rvis_percentile_EVS: 56.25

Haploinsufficiency Scores

• pHI: 0.629
• hipred: Y
• hipred_score: 0.530
• ghis: 0.583

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.925

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Low	Low	Low
Primary Immunodeficiency	Medium	Low	Medium
Cancer	Low	Low	Low

Mouse Genome Informatics

• Gene name: Rprm

Gene ontology

• Biological process: cell cycle arrest;regulation of mitotic cell cycle
• Cellular component: cytoplasm;integral component of membrane
• Molecular function: protein binding