RSL24D1

ribosomal L24 domain containing 1

Basic information

Region (hg38): 15:55180806-55197049

Previous symbols: [ "C15orf15" ]

Links

ENSG00000137876 ∙ NCBI:51187 ∙ OMIM:613262 ∙ HGNC:18479 ∙ Uniprot:Q9UHA3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RSL24D1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RSL24D1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			9			9
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	9	0	0

Variants in RSL24D1

This is a list of pathogenic ClinVar variants found in the RSL24D1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-55182206-T-A		not specified	Uncertain significance (Feb 14, 2023)
15-55183321-G-A		not specified	Uncertain significance (Dec 15, 2023)
15-55183332-A-G		not specified	Uncertain significance (Mar 29, 2022)
15-55183338-T-C		not specified	Uncertain significance (Jan 10, 2022)
15-55185388-C-A		not specified	Uncertain significance (May 04, 2022)
15-55185419-G-A		not specified	Uncertain significance (Mar 21, 2022)
15-55190999-G-C		not specified	Uncertain significance (Oct 14, 2023)
15-55191016-T-C		not specified	Uncertain significance (Mar 30, 2024)
15-55196834-C-T		not specified	Uncertain significance (May 03, 2023)
15-55196875-A-G		not specified	Uncertain significance (Jun 28, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RSL24D1	protein_coding	protein_coding	ENST00000260443	6	16262

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.878	0.121	125715	0	2	125717	0.00000795

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.256	85	91.9	0.925	0.00000491	1097
Missense in Polyphen		17	19.643	0.86543		284
Synonymous	0.164	26	27.1	0.960	0.00000126	249
Loss of Function	2.83	1	11.3	0.0889	6.38e-7	130

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.0000463	0.0000462
European (Non-Finnish)	0.00000881	0.00000879
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Involved in the biogenesis of the 60S ribosomal subunit. Ensures the docking of GTPBP4/NOG1 to pre-60S particles (By similarity). {ECO:0000250}.
• Pathway: Ribosome - Homo sapiens (human) (Consensus)

Recessive Scores

• pRec: 0.118

Intolerance Scores

• rvis_EVS: -0.12
• rvis_percentile_EVS: 44.54

Haploinsufficiency Scores

• pHI: 0.540
• hipred: Y
• hipred_score: 0.825
• ghis: 0.678

Essentials

• essential_gene_CRISPR: E
• essential_gene_gene_trap: E
• gene_indispensability_pred: E
• gene_indispensability_score: 0.869

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Rsl24d1

Gene ontology

• Biological process: ribosomal large subunit assembly;translation;assembly of large subunit precursor of preribosome
• Cellular component: nucleus;nucleolus;cytosolic large ribosomal subunit
• Molecular function: RNA binding;structural constituent of ribosome;protein binding