RSPH14

radial spoke head 14 homolog, the group of Armadillo like helical domain containing|Axonemal radial spoke subunits

Basic information

Region (hg38): 22:23059415-23145021

Previous symbols: [ "RTDR1" ]

Links

ENSG00000100218 ∙ NCBI:27156 ∙ OMIM:605663 ∙ HGNC:13437 ∙ Uniprot:Q9UHP6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the RSPH14 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the RSPH14 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			21	3		24
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			7		1	8
Total	0	0	28	3	1

Variants in RSPH14

This is a list of pathogenic ClinVar variants found in the RSPH14 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
22-23059505-C-T		not specified	Uncertain significance (May 27, 2022)
22-23059553-A-T		not specified	Uncertain significance (Mar 16, 2022)
22-23059569-G-A		not specified	Uncertain significance (Apr 26, 2024)
22-23059593-G-A		not specified	Uncertain significance (Dec 03, 2021)
22-23059599-C-T		not specified	Uncertain significance (May 17, 2023)
22-23059644-G-A		not specified	Uncertain significance (Dec 03, 2021)
22-23059712-T-C		not specified	Uncertain significance (Apr 25, 2022)
22-23061827-C-T		not specified	Uncertain significance (Dec 12, 2023)
22-23061842-C-T		not specified	Uncertain significance (May 26, 2023)
22-23061899-G-C		not specified	Uncertain significance (Oct 10, 2023)
22-23063912-G-T		not specified	Likely benign (Dec 18, 2023)
22-23063924-C-T		not specified	Uncertain significance (Dec 14, 2023)
22-23063936-G-A		not specified	Uncertain significance (May 29, 2024)
22-23064002-C-T		not specified	Uncertain significance (Jul 05, 2023)
22-23064007-G-C		not specified	Uncertain significance (Mar 18, 2024)
22-23064092-C-T		not specified	Uncertain significance (Feb 14, 2024)
22-23095727-A-C		not specified	Uncertain significance (Nov 08, 2022)
22-23095757-G-A		not specified	Uncertain significance (Dec 06, 2021)
22-23096123-G-A		not specified	Uncertain significance (Sep 29, 2023)
22-23096188-G-A		not specified	Uncertain significance (Dec 18, 2023)
22-23096349-C-T			Benign (Jul 13, 2018)
22-23123264-G-A		not specified	Uncertain significance (Feb 08, 2023)
22-23123267-G-A		not specified	Uncertain significance (Mar 05, 2024)
22-23123284-G-C		not specified	Uncertain significance (Nov 17, 2023)
22-23134067-T-C		not specified	Uncertain significance (Mar 18, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
RSPH14	protein_coding	protein_coding	ENST00000216036	6	85616

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.000360	0.845	125737	0	11	125748	0.0000437

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.300	225	213	1.06	0.0000127	2259
Missense in Polyphen		75	68.742	1.091		768
Synonymous	0.107	94	95.3	0.986	0.00000625	714
Loss of Function	1.27	7	11.7	0.600	5.65e-7	137

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000289	0.0000289
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.0000440	0.0000439
Middle Eastern	0.0000544	0.0000544
South Asian	0.0000980	0.0000980
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.107

Intolerance Scores

• rvis_EVS: 0.89
• rvis_percentile_EVS: 89.19

Haploinsufficiency Scores

• pHI: 0.0767
• hipred: N
• hipred_score: 0.170
• ghis: 0.395

Essentials

• essential_gene_gene_trap: N

Mouse Genome Informatics

• Gene name: Rsph14

Gene ontology

• Biological process: biological_process
• Cellular component: cellular_component
• Molecular function: molecular_function;protein binding