RYR1

protein-coding

ryanodine receptor 1, the group of Ryanodine receptors|Protein phosphatase 1 regulatory subunits

Gene summary

This gene encodes a ryanodine receptor found in skeletal muscle. The encoded protein functions as a calcium release channel in the sarcoplasmic reticulum but also serves to connect the sarcoplasmic reticulum and transverse tubule. Mutations in this gene are associated with malignant hyperthermia susceptibility, central core disease, and minicore myopathy with external ophthalmoplegia. Alternatively spliced transcripts encoding different isoforms have been described. [provided by RefSeq, Jul 2008]

Previous symbols:
  • MHS
  • MHS1
  • CCO

MANE transcript

NM_000540.3

Inheritance

AD, AR

ClinVar variants

P:1021U:4679B:2737

Top phenotype

Malignant hyperthermia, susceptibility 1; King-Denborough syndrome; Congenital myopathy 1A, autosomal dominant, with susceptibility to malignant hyperthermia; Congenital myopathy 1B, autosomal recessive; Centronuclear myopathy

gnomAD constraint

pLI —, LoF o/e 0.38

Max pathogenic AF

—

Genomic locus

chr19:38,433,691-38,595,273

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~161.6 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

RYR1-related myopathySTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0100150

Submitter: PanelApp Australia

congenital multicore myopathy with external ophthalmoplegiaDEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0009712

Submitter: G2P

central core myopathySTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0007294

Submitter: Genomics England PanelApp

RYR1-related myopathySTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0100150

Submitter: PanelApp Australia

RYR1-related myopathyDEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0100150

Submitter: ClinGen

RYR1 was reported in relation to autosomal recessive RYR1-related myopathy in 2002 (Ferreiro et al., PMID:12112081). At least 14 unique variants (missense, frameshift, nonsense, splice) have been reported in humans. Evidence supporting this gene-disease relationship includes case-level data and experimental data. Variants in this gene have been reported in at least 7 probands in 4 publications (PMIDs: 12112081, 12136074, 12719381, 18253926). More evidence is available in the literature, but the maximum score for genetic evidence (12 pts.) and experimental evidence (6 pts) has been reached. Of note, this gene has also been implicated in autosomal dominant malignant hyperthermia and autosomal dominant RYR1-related myopathy. These will be assessed separately. This gene-disease association is supported by expression studies and animal models. In summary, RYR1 is definitively associated with autosomal recessive RYR1-related myopathy.

malignant hyperthermia, susceptibility to, 1DEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0007783

Submitter: Ambry Genetics

malignant hyperthermia, susceptibility to, 1STRONG

Inheritance Pattern: AD

Disease ID:MONDO:0007783

Submitter: PanelApp Australia

central core myopathySUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0007294

Submitter: Orphanet

congenital myopathy with myasthenic-like onsetSUPPORTIVE

Inheritance Pattern: AR

Disease ID:MONDO:0018528

Submitter: Orphanet

autosomal recessive centronuclear myopathySUPPORTIVE

Inheritance Pattern: AR

Disease ID:MONDO:0015705

Submitter: Orphanet

benign Samaritan congenital myopathySUPPORTIVE

Inheritance Pattern: AR

Disease ID:MONDO:0017936

Submitter: Orphanet

congenital multicore myopathy with external ophthalmoplegiaSTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0009712

Submitter: Genomics England PanelApp

malignant hyperthermia, susceptibility to, 1STRONG

Inheritance Pattern: AD

Disease ID:MONDO:0007783

Submitter: Labcorp Genetics (formerly Invitae)

King-Denborough syndromeSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0020485

Submitter: Orphanet

central core myopathySTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0007294

Submitter: Genomics England PanelApp

malignant hyperthermia, susceptibility to, 1STRONG

Inheritance Pattern: AD

Disease ID:MONDO:0007783

Submitter: Genomics England PanelApp

central core myopathySTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0007294

Submitter: Labcorp Genetics (formerly Invitae)

malignant hyperthermia, susceptibility to, 1DEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0007783

Submitter: ClinGen

RYR1 has been reported in relation to autosomal dominant malignant hyperthermia susceptibility as early as 1991 by Gillard et al. (PMID:1774074). Malignant hyperthermia is a pharmacogenetic disorder of skeletal muscle calcium regulation associated with uncontrolled skeletal muscle metabolism with significant morbidity in response to specific anesthetics. Numerous unique missense variants have been reported in humans and the mechanism for disease is heterozygous gain-of-function. Evidence supporting this gene-disease relationship includes case-level, segregation, and experimental data. More evidence is available in the literature, but the maximum score for genetic evidence (12 pts.) has been reached. Of note, this gene has also been implicated in autosomal dominant and autosomal recessive congenital myopathies. These associations have been assessed separately by the ClinGen Congenital Myopathies GCEP. In summary, RYR1 is definitively associated with autosomal dominant malignant hyperthermia susceptibility. This has been repeatedly demonstrated in both the research and clinical diagnostic settings and has been upheld over time. This classification was approved by the ClinGen General GCEP on 11/25/2020. (SOP Version 8).

RYR1-related myopathyDEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0100150

Submitter: ClinGen

RYR1 was reported in relation to autosomal dominant RYR1-related myopathy in 1993. At least 7 unique variants (missense) have been reported in humans. Evidence supporting this gene-disease relationship includes case-level data and experimental data. Variants in this gene have been reported in at least 7 probands in 6 publications (PMIDs: 8220422, 12136074, 20888934, 17376685, 28527222, 25960145). More evidence is available in the literature, but the maximum score for genetic evidence (12 pts.) has been reached. This gene-disease association is supported by knock-in mouse models, in vitro functional assays, and expression studies. In summary, RYR1 is definitively associated with autosomal dominant RYR1-related myopathy. Of note, this gene has also been implicated in autosomal recessive RYR1-related myopathy and autosomal dominant malignant hyperthermia susceptibility.

malignant hyperthermia of anesthesiaSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0018493

Submitter: Orphanet

lethal multiple pterygium syndromeSUPPORTIVE

Inheritance Pattern: AR

Disease ID:MONDO:0009668

Submitter: Orphanet

central core myopathySTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0007294

Submitter: Labcorp Genetics (formerly Invitae)

Clinical Genomic Database (CGD)

Malignant hyperthermia, susceptibility 1; King-Denborough syndrome; Congenital myopathy 1A, autosomal dominant, with susceptibility to malignant hyperthermia; Congenital myopathy 1B, autosomal recessive; Centronuclear myopathyAD/AR

Manifestation: Cardiovascular; Craniofacial; Musculoskeletal; Renal

Intervention: Cardiovascular; Musculoskeletal; Renal; Pharmacogenomic

Rationale: Individuals with recessive inheritance have been described; Invididuals are susceptible to malignant hyperthermic crisis (which can affect both skeletal muscle and cardiac function) in a number of situations, including when exposed to specific agents such as certain agents used in anesthesia (eg, halothane) or depolarizing muscle relaxants (eg, succinyl choline), and to treat or prevent acute crises, dantrolene can be effective; Individuals may also suffer from exertional rhabdomyolysis or have attacks triggered by tachycardia or acidosis, and precautions may be beneficial; For Minicore myopathy with external ophthalmoplegia, Centronuclear myopathy, individuals with these conditions may also be at risk of malignant hyperthermia, and appropriate precautions may be beneficial

Comments: Individuals with RYR1-related conditions may be at risk of malignant hyperthermia

Refs: 13396066; 637752; 7362206; 7299413; 6348539; 1774074; 8220423; 8220422; 9199552; 9497245; 10097181; 11113224; 11389482; 11448278; 12112081; 12136074; 12467748; 12719381; 14732627; 16380615; 16163667; 16084090; 17190947; 17376685; 17538032; 18253926; 18765655; 19303294; 19734047; 19807743; 20301565; 20301325; 20839240Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to RYR1 variants in ClinVar

95 Conditions Cataloged
RYR1-related disorderTotal: 7462
Malignant hyperthermia, susceptibility to, 1Total: 5130
not providedTotal: 2998
Congenital multicore myopathy with external ophthalmoplegiaTotal: 1023
Central core myopathyTotal: 949
not specifiedTotal: 745
Inborn genetic diseasesTotal: 635
King Denborough syndromeTotal: 579

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_000540.3. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
2
clinvar
6
clinvar
82
clinvar
2573
clinvar
19
clinvar
2682
missense
80
clinvar
336
clinvar
4490
clinvar
122
clinvar
19
clinvar
5047
nonsense
108
clinvar
48
clinvar
25
clinvar
181
start loss
1
clinvar
1
frameshift
159
clinvar
117
clinvar
52
clinvar
1
clinvar
329
splice donor/acceptor (+/-2bp)
23
clinvar
142
clinvar
29
clinvar
3
clinvar
197
Total37264946792699388437

Highest pathogenic variant AF is 0.00021201343

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 17 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_000540.3RefSeqNP_000531.2106MANE Select
ENST00000359596.8EnsemblENSP00000352608.2106MANE Select
NM_001042723.2RefSeqNP_001036188.1105Standard
ENST00000355481.8EnsemblENSP00000347667.3105Standard

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
ryr1bDanio rerio

Structure: fast muscle cell

Quality: disorganized

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Oxytocin signaling pathway - Homo sapiens (human)
  • Long-term depression - Homo sapiens (human)
  • Circadian entrainment - Homo sapiens (human)
  • Calcium signaling pathway - Homo sapiens (human)
  • Apelin signaling pathway - Homo sapiens (human)

Biological Process

  • response to hypoxia
  • outflow tract morphogenesis
  • calcium ion transport
  • muscle contraction
  • release of sequestered calcium ion into cytosol by sarcoplasmic reticulum

Molecular Function

  • protease binding
  • ryanodine-sensitive calcium-release channel activity
  • voltage-gated calcium channel activity
  • calcium channel activity
  • calcium ion binding

Cellular Component

  • cytoplasm
  • smooth endoplasmic reticulum
  • plasma membrane
  • integral component of plasma membrane
  • cell cortex

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000359596
Coding exons
106
Length
153866
Individuals with no LoFs
125404
Homozygous LoFs
0
Heterozygous LoFs
344
Defined
125748
p
0.00137
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense1.9226982.99e+30.9010.00021832806
Missense (PolyPhen)524603.910.867686389
Synonymous-2.1713651.27e+31.080.00009729980
Loss of Function9.05972520.3850.00001392847

Population LoF Frequency

PopulationCAFp-valueStatus
African0.00100.00098rare
Latino/Admixed American0.00140.0014notable
Ashkenazi Jewish0.00430.0043notable
East Asian0.000880.00087rare
Finnish0.00110.0011notable
European (Non-Finnish)0.00160.0016notable
South Asian0.000390.00039rare
Other0.00160.0016notable

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Calcium channel that mediates the release of Ca(2+) from the sarcoplasmic reticulum into the cytoplasm and thereby plays a key role in triggering muscle contraction following depolarization of T-tubules (PubMed:11741831, PubMed:16163667). Repeated very high-level exercise increases the open probability of the channel and leads to Ca(2+) leaking into the cytoplasm (PubMed:18268335). Can also mediate the release of Ca(2+) from intracellular stores in neurons, and may thereby promote prolonged Ca(2+) signaling in the brain. Required for normal embryonic development of muscle fibers and skeletal muscle. Required for normal heart morphogenesis, skin development and ossification during embryogenesis (By similarity). {ECO:0000250|UniProtKB:E9PZQ0, ECO:0000269|PubMed:18268335, ECO:0000305|PubMed:11741831, ECO:0000305|PubMed:16163667}.;
Disease
DISEASE: Malignant hyperthermia 1 (MHS1) [MIM:145600]: Autosomal dominant pharmacogenetic disorder of skeletal muscle and is one of the main causes of death due to anesthesia. In susceptible people, an MH episode can be triggered by all commonly used inhalational anesthetics such as halothane and by depolarizing muscle relaxants such as succinylcholine. The clinical features of the myopathy are hyperthermia, accelerated muscle metabolism, contractures, metabolic acidosis, tachycardia and death, if not treated with the postsynaptic muscle relaxant, dantrolene. Susceptibility to MH can be determined with the 'in vitro' contracture test (IVCT): observing the magnitude of contractures induced in strips of muscle tissue by caffeine alone and halothane alone. Patients with normal response are MH normal (MHN), those with abnormal response to caffeine alone or halothane alone are MH equivocal (MHE(C) and MHE(H) respectively). {ECO:0000269|PubMed:10051009, ECO:0000269|PubMed:10484775, ECO:0000269|PubMed:10612851, ECO:0000269|PubMed:10823104, ECO:0000269|PubMed:10888602, ECO:0000269|PubMed:11241852, ECO:0000269|PubMed:11389482, ECO:0000269|PubMed:11525881, ECO:0000269|PubMed:11575529, ECO:0000269|PubMed:11928716, ECO:0000269|PubMed:12059893, ECO:0000269|PubMed:12066726, ECO:0000269|PubMed:12123492, ECO:0000269|PubMed:12208234, ECO:0000269|PubMed:12411788, ECO:0000269|PubMed:12709367, ECO:0000269|PubMed:12883402, ECO:0000269|PubMed:1354642, ECO:0000269|PubMed:14732627, ECO:0000269|PubMed:14985404, ECO:0000269|PubMed:15221887, ECO:0000269|PubMed:15448513, ECO:0000269|PubMed:16163667, ECO:0000269|PubMed:1774074, ECO:0000269|PubMed:19191329, ECO:0000269|PubMed:19685112, ECO:0000269|PubMed:20142353, ECO:0000269|PubMed:20681998, ECO:0000269|PubMed:23558838, ECO:0000269|PubMed:24013571, ECO:0000269|PubMed:26115329, ECO:0000269|PubMed:26381711, ECO:0000269|PubMed:26631338, ECO:0000269|PubMed:27586648, ECO:0000269|PubMed:7751854, ECO:0000269|PubMed:7849712, ECO:0000269|PubMed:7881417, ECO:0000269|PubMed:8012359, ECO:0000269|PubMed:8220423, ECO:0000269|PubMed:9066328, ECO:0000269|PubMed:9138151, ECO:0000269|PubMed:9389851, ECO:0000269|PubMed:9450902, ECO:0000269|PubMed:9497245}. Note=Disease susceptibility is associated with variations affecting the gene represented in this entry.; DISEASE: Central core disease of muscle (CCD) [MIM:117000]: Autosomal dominant congenital myopathy, but a severe autosomal recessive form also exists. Both clinical and histological variability is observed. Affected individuals typically display hypotonia and proximal muscle weakness in infancy, leading to the delay of motor milestones. The clinical course of the disorder is usually slow or nonprogressive in adulthood, and the severity of the symptoms may vary from normal to significant muscle weakness. Microscopic examination of CCD-affected skeletal muscle reveals a predominance of type I fibers containing amorphous-looking areas (cores) that do not stain with oxidative and phosphorylase histochemical techniques. {ECO:0000269|PubMed:10097181, ECO:0000269|PubMed:11113224, ECO:0000269|PubMed:11709545, ECO:0000269|PubMed:11741831, ECO:0000269|PubMed:12112081, ECO:0000269|PubMed:12136074, ECO:0000269|PubMed:12565913, ECO:0000269|PubMed:12566385, ECO:0000269|PubMed:12937085, ECO:0000269|PubMed:14670767, ECO:0000269|PubMed:14985404, ECO:0000269|PubMed:17204054, ECO:0000269|PubMed:17226826, ECO:0000269|PubMed:18253926, ECO:0000269|PubMed:18312400, ECO:0000269|PubMed:20142353, ECO:0000269|PubMed:21674524, ECO:0000269|PubMed:23558838, ECO:0000269|PubMed:24561095, ECO:0000269|PubMed:26381711, ECO:0000269|PubMed:27234031, ECO:0000269|PubMed:27586648, ECO:0000269|PubMed:7829078, ECO:0000269|PubMed:8220422, ECO:0000269|PubMed:8220423, ECO:0000269|PubMed:9497245}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Multiminicore disease with external ophthalmoplegia (MMDO) [MIM:255320]: Clinically heterogeneous neuromuscular disorder. General features include neonatal hypotonia, delayed motor development, and generalized muscle weakness and amyotrophy, which may progress slowly or remain stable. Muscle biopsy shows multiple, poorly circumscribed, short areas of sarcomere disorganization and mitochondria depletion (areas termed minicores) in most muscle fibers. Typically, no dystrophic signs, such as muscle fiber necrosis or regeneration or significant endomysial fibrosis, are present in multiminicore disease. {ECO:0000269|PubMed:12719381, ECO:0000269|PubMed:16380615, ECO:0000269|PubMed:20583297}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Note=Defects in RYR1 may be a cause of Samaritan myopathy, a congenital myopathy with benign course. Patients display severe hypotonia and respiratory distress at birth. Unlike other congenital myopathies, the health status constantly improves and patients are minimally affected at adulthood.;

Intolerance Scores

LoFtool
0.00248
RVIS EVS
-8.29
RVIS percentile EVS
0.01

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.872

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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