SERPINA10
Basic information
Region (hg38): 14:94280460-94293268
Links
Phenotypes
GenCC
Source:
ClinVar
This is a list of variants' phenotypes submitted to
Variants pathogenicity by type
Statistics on ClinVar variants can assist in determining whether a specific variant type in the SERPINA10 gene is commonly pathogenic or not.
In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.
Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.
Variant type | Pathogenic | Likely pathogenic | VUS | Likely benign | Benign | Sum |
---|---|---|---|---|---|---|
synonymous | 0 | |||||
missense | 26 | 28 | ||||
nonsense | 1 | |||||
start loss | 0 | |||||
frameshift | 0 | |||||
inframe indel | 0 | |||||
splice donor/acceptor (+/-2bp) | 0 | |||||
splice region | 0 | |||||
non coding | 0 | |||||
Total | 0 | 0 | 26 | 3 | 0 |
Variants in SERPINA10
This is a list of pathogenic ClinVar variants found in the SERPINA10 region.
You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.
Position | Type | Phenotype | Significance | ClinVar |
---|---|---|---|---|
14-94283973-G-A | not specified | Uncertain significance (Aug 30, 2022) | ||
14-94284011-C-G | not specified | Uncertain significance (Jun 18, 2021) | ||
14-94284047-C-T | not specified | Uncertain significance (May 04, 2023) | ||
14-94284070-C-T | not specified | Uncertain significance (Oct 03, 2022) | ||
14-94284138-T-C | not specified | Uncertain significance (Dec 17, 2023) | ||
14-94284144-T-C | not specified | Likely benign (Jan 31, 2022) | ||
14-94286186-C-G | not specified | Uncertain significance (Feb 02, 2024) | ||
14-94286221-G-T | not specified | Uncertain significance (Jun 02, 2023) | ||
14-94288306-C-T | Venous thrombosis, susceptibility to | Uncertain significance (-) | ||
14-94288308-A-G | not specified | Uncertain significance (Aug 02, 2021) | ||
14-94288382-A-G | not specified | Uncertain significance (Jan 02, 2024) | ||
14-94288388-G-A | not specified | Uncertain significance (Jan 10, 2023) | ||
14-94288427-C-T | not specified | Likely benign (Mar 15, 2024) | ||
14-94288445-G-T | not specified | Uncertain significance (Feb 13, 2024) | ||
14-94288518-C-T | not specified | Uncertain significance (Mar 07, 2024) | ||
14-94289953-C-T | not specified | Likely benign (Oct 05, 2023) | ||
14-94289954-G-A | not specified | Uncertain significance (Oct 03, 2022) | ||
14-94290074-C-T | not specified | Uncertain significance (Jan 04, 2022) | ||
14-94290079-A-G | not specified | Uncertain significance (Mar 12, 2024) | ||
14-94290100-A-T | not specified | Uncertain significance (Apr 01, 2024) | ||
14-94290199-G-A | not specified | Uncertain significance (Feb 28, 2024) | ||
14-94290260-A-C | not specified | Uncertain significance (Nov 17, 2022) | ||
14-94290263-C-G | not specified | Uncertain significance (Jan 17, 2024) | ||
14-94290305-T-G | not specified | Uncertain significance (Feb 28, 2023) | ||
14-94290320-T-A | not specified | Uncertain significance (Oct 12, 2022) |
GnomAD
Source:
Gene | Type | Bio Type | Transcript | Coding Exons | Length |
---|---|---|---|---|---|
SERPINA10 | protein_coding | protein_coding | ENST00000393096 | 4 | 9959 |
pLI Probability LOF Intolerant | pRec Probability LOF Recessive | Individuals with no LOFs | Individuals with Homozygous LOFs | Individuals with Heterozygous LOFs | Defined | p |
---|---|---|---|---|---|---|
4.15e-11 | 0.0278 | 122813 | 18 | 2917 | 125748 | 0.0117 |
Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible in Transcript | |
---|---|---|---|---|---|---|
Missense | -0.189 | 244 | 236 | 1.03 | 0.0000123 | 2927 |
Missense in Polyphen | 63 | 65.362 | 0.96386 | 868 | ||
Synonymous | 0.0255 | 94 | 94.3 | 0.997 | 0.00000528 | 864 |
Loss of Function | -0.417 | 15 | 13.4 | 1.12 | 5.69e-7 | 182 |
LoF frequencies by population
Ethnicity | Sum of pLOFs | p |
---|---|---|
African & African-American | 0.0121 | 0.0121 |
Ashkenazi Jewish | 0.0188 | 0.0186 |
East Asian | 0.00223 | 0.00223 |
Finnish | 0.0175 | 0.0175 |
European (Non-Finnish) | 0.0121 | 0.0120 |
Middle Eastern | 0.00223 | 0.00223 |
South Asian | 0.0175 | 0.0175 |
Other | 0.0161 | 0.0159 |
dbNSFP
Source:
- Function
- FUNCTION: Inhibits activity of the coagulation protease factor Xa in the presence of PROZ, calcium and phospholipids. Also inhibits factor XIa in the absence of cofactors. {ECO:0000269|PubMed:11049983}.;
- Pathway
- Post-translational protein phosphorylation;Post-translational protein modification;Metabolism of proteins;Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)
(Consensus)
Recessive Scores
- pRec
- 0.144
Intolerance Scores
- loftool
- 0.109
- rvis_EVS
- 2.4
- rvis_percentile_EVS
- 98.51
Haploinsufficiency Scores
- pHI
- 0.119
- hipred
- N
- hipred_score
- 0.146
- ghis
Essentials
- essential_gene_CRISPR
- N
- essential_gene_CRISPR2
- N
- essential_gene_gene_trap
- N
- gene_indispensability_pred
- N
- gene_indispensability_score
- 0.253
Gene Damage Prediction
All | Recessive | Dominant | |
---|---|---|---|
Mendelian | Medium | Medium | Medium |
Primary Immunodeficiency | Medium | Medium | Medium |
Cancer | Medium | Medium | Medium |
Mouse Genome Informatics
- Gene name
- Serpina10
- Phenotype
- cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan); mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span); nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan); homeostasis/metabolism phenotype;
Gene ontology
- Biological process
- blood coagulation;negative regulation of endopeptidase activity;post-translational protein modification;cellular protein metabolic process;regulation of acrosome reaction
- Cellular component
- extracellular space;endoplasmic reticulum lumen;extracellular exosome
- Molecular function
- serine-type endopeptidase inhibitor activity;heparin binding