SERPINA10

serpin family A member 10, the group of Serpin peptidase inhibitors

Basic information

Region (hg38): 14:94280460-94293268

Links

ENSG00000140093NCBI:51156OMIM:605271HGNC:15996Uniprot:Q9UK55AlphaFoldGenCCjaxSfariGnomADPubmedClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SERPINA10 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SERPINA10 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type Pathogenic Likely pathogenic VUS Likely benign Benign Sum
synonymous
0
missense
26
clinvar
2
clinvar
28
nonsense
1
clinvar
1
start loss
0
frameshift
0
inframe indel
0
splice donor/acceptor (+/-2bp)
0
splice region
0
non coding
0
Total 0 0 26 3 0

Variants in SERPINA10

This is a list of pathogenic ClinVar variants found in the SERPINA10 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position Type Phenotype Significance ClinVar
14-94283973-G-A not specified Uncertain significance (Aug 30, 2022)2403051
14-94284011-C-G not specified Uncertain significance (Jun 18, 2021)2218650
14-94284047-C-T not specified Uncertain significance (May 04, 2023)2543862
14-94284070-C-T not specified Uncertain significance (Oct 03, 2022)2315180
14-94284138-T-C not specified Uncertain significance (Dec 17, 2023)3160279
14-94284144-T-C not specified Likely benign (Jan 31, 2022)2274702
14-94286186-C-G not specified Uncertain significance (Feb 02, 2024)3160278
14-94286221-G-T not specified Uncertain significance (Jun 02, 2023)2513706
14-94288306-C-T Venous thrombosis, susceptibility to Uncertain significance (-)5106
14-94288308-A-G not specified Uncertain significance (Aug 02, 2021)2392775
14-94288382-A-G not specified Uncertain significance (Jan 02, 2024)3160291
14-94288388-G-A not specified Uncertain significance (Jan 10, 2023)2461231
14-94288427-C-T not specified Likely benign (Mar 15, 2024)3317535
14-94288445-G-T not specified Uncertain significance (Feb 13, 2024)3160289
14-94288518-C-T not specified Uncertain significance (Mar 07, 2024)3160288
14-94289953-C-T not specified Likely benign (Oct 05, 2023)3160287
14-94289954-G-A not specified Uncertain significance (Oct 03, 2022)2373330
14-94290074-C-T not specified Uncertain significance (Jan 04, 2022)2348056
14-94290079-A-G not specified Uncertain significance (Mar 12, 2024)3160286
14-94290100-A-T not specified Uncertain significance (Apr 01, 2024)3317536
14-94290199-G-A not specified Uncertain significance (Feb 28, 2024)3160285
14-94290260-A-C not specified Uncertain significance (Nov 17, 2022)2224535
14-94290263-C-G not specified Uncertain significance (Jan 17, 2024)3160284
14-94290305-T-G not specified Uncertain significance (Feb 28, 2023)2464968
14-94290320-T-A not specified Uncertain significance (Oct 12, 2022)2318074

GnomAD

Source: gnomAD

GeneTypeBio TypeTranscript Coding Exons Length
SERPINA10protein_codingprotein_codingENST00000393096 49959
pLI Probability
LOF Intolerant
pRec Probability
LOF Recessive
Individuals with
no LOFs
Individuals with
Homozygous LOFs
Individuals with
Heterozygous LOFs
Defined p
4.15e-110.02781228131829171257480.0117
Z-Score Observed Expected Observed/Expected Mutation Rate Total Possible in Transcript
Missense-0.1892442361.030.00001232927
Missense in Polyphen6365.3620.96386868
Synonymous0.02559494.30.9970.00000528864
Loss of Function-0.4171513.41.125.69e-7182

LoF frequencies by population

EthnicitySum of pLOFs p
African & African-American0.01210.0121
Ashkenazi Jewish0.01880.0186
East Asian0.002230.00223
Finnish0.01750.0175
European (Non-Finnish)0.01210.0120
Middle Eastern0.002230.00223
South Asian0.01750.0175
Other0.01610.0159

dbNSFP

Source: dbNSFP

Function
FUNCTION: Inhibits activity of the coagulation protease factor Xa in the presence of PROZ, calcium and phospholipids. Also inhibits factor XIa in the absence of cofactors. {ECO:0000269|PubMed:11049983}.;
Pathway
Post-translational protein phosphorylation;Post-translational protein modification;Metabolism of proteins;Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) (Consensus)

Recessive Scores

pRec
0.144

Intolerance Scores

loftool
0.109
rvis_EVS
2.4
rvis_percentile_EVS
98.51

Haploinsufficiency Scores

pHI
0.119
hipred
N
hipred_score
0.146
ghis

Essentials

essential_gene_CRISPR
N
essential_gene_CRISPR2
N
essential_gene_gene_trap
N
gene_indispensability_pred
N
gene_indispensability_score
0.253

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium

Mouse Genome Informatics

Gene name
Serpina10
Phenotype
cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan); mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span); nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan); homeostasis/metabolism phenotype;

Gene ontology

Biological process
blood coagulation;negative regulation of endopeptidase activity;post-translational protein modification;cellular protein metabolic process;regulation of acrosome reaction
Cellular component
extracellular space;endoplasmic reticulum lumen;extracellular exosome
Molecular function
serine-type endopeptidase inhibitor activity;heparin binding