SGCD

protein-coding

sarcoglycan delta

Gene summary

The protein encoded by this gene is one of the four known components of the sarcoglycan complex, which is a subcomplex of the dystrophin-glycoprotein complex (DGC). DGC forms a link between the F-actin cytoskeleton and the extracellular matrix. This protein is expressed most abundantly in skeletal and cardiac muscle. Mutations in this gene have been associated with autosomal recessive limb-girdle muscular dystrophy and dilated cardiomyopathy. Alternatively spliced transcript variants encoding distinct isoforms have been observed for this gene. [provided by RefSeq, Jul 2008]

MANE transcript

NM_000337.6

Inheritance

AR, AD

ClinVar variants

P:58U:207B:140

Top phenotype

Cardiomyopathy, dilated, 1L

gnomAD constraint

pLI —, LoF o/e 0.44

Max pathogenic AF

—

Genomic locus

chr5:155,870,344-156,767,788

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~897.4 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

autosomal recessive limb-girdle muscular dystrophy type 2FMODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0011028

Submitter: Ambry Genetics

familial isolated dilated cardiomyopathySUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0015470

Submitter: Orphanet

autosomal recessive limb-girdle muscular dystrophyDEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0015152

Submitter: ClinGen

SGCD was first reported in relation to autosomal recessive limb-girdle muscular dystrophy in 1996 (Nigro et al., PMID: 8841194). At least eight variants (e.g. missense, nonsense, frameshift, etc) have been reported in humans. Evidence supporting this gene-disease relationship includes case-level data, segregation data, and experimental data. Variants in this gene have been reported in at least eleven probands in seven publications (PMIDs: 8841194, 19259135, 20623375, 10838250, 10735275, 9832045, 30733730). Variants in this gene segregated with the disease in eight additional family members and many other heterozygous carriers. More evidence is available in the literature, but the maximum score for genetic evidence (12 pts.) has been reached. The mechanism for disease is protein loss of function, with the loss or disruption of δ-sarcoglycan causing disruption and mislocalization of the sarcoglycan complex which causes destabilization of the sarcolemma and the resulting muscular phenotypes (PMID: 26709803). Of note, this gene has also been implicated in dilated cardiomyopathy which has been assessed separately.This gene-disease association is supported by two KO mouse models, expression studies, a partial mouse rescue, and intercellular protein interactions. The KO mouse models provide strong evidence by recapitulating the observed phenotypes in humans and a partial rescue in one was performed via restoring some of the wildtype SGCD functionality via embryonic stem cells. Expression evidence clearly links the protein to skeletal and cardiac muscle where phenotypes are observed. Finally, the protein physically interacts with all the other sarcoglycans which are all associated with AR LGMD when their function is affected. In summary, SGCD is definitively associated with autosomal recessive limb-girdle muscular dystrophy. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. This classification was approved by the ClinGen Limb-Girdle Muscular Dystrophy GCEP on April 10, 2020 (SOP Version 7). This gene curation was re-approved and published on 11/14/24 by the Muscular Dystrophies and Myopathies GCEP to reflect the change in the panel's name from LGMD GCEP to MDM GCEP. As part of this process, the genetic evidence was re-scored in accordance with SOP version 11.

autosomal recessive limb-girdle muscular dystrophySTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0015152

Submitter: PanelApp Australia

autosomal recessive limb-girdle muscular dystrophy type 2FDEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0011028

Submitter: Myriad Women's Health

familial dilated cardiomyopathyLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0016333

Submitter: G2P

autosomal recessive limb-girdle muscular dystrophy type 2FSTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0011028

Submitter: Labcorp Genetics (formerly Invitae)

dilated cardiomyopathy 1LNO_KNOWN

Inheritance Pattern: AD

Disease ID:MONDO:0011702

Submitter: Ambry Genetics

dilated cardiomyopathy 1LLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0011702

Submitter: ClinGen

SGCD was originally evaluated for DCM by the ClinGen DCM GCEP on 22 November 2019. Evidence of the association of this gene with DCM was re-evaluated using SOP v10 on 30th March 2025. At the time of recuration there are minimal changes in score and new evidence; Therefore, the clinical validity classification did not change and remains Limited. A summary of the information contributing to the classification of this gene at the time of re-evaluation is summarized herein. SGCD was first reported in relation to autosomal dominant dilated cardiomyopathy in 2000 (Tsubata et al, PMID 10974018). Human genetic evidence supporting this gene-disease relationship includes case-level data. At least 30 variants (20 missense, one splice, one nonsense, two frameshift, three deletion and three intronic polymorphisms) have been reported in humans. Though most of these variants are found too commonly to explain disease. Variants in this gene have been reported in at least 33 probands in 11 publications (Tsubata et al, 2000, PMID: 10974018; Karkkainen et al, 2003, PMID: 14564412; Sylvius et al, 2003, PMID: 12794684; Baydar et al, 2016, PMID: 27488758; Bauer et al, 2009, PMID: 19259135; Chen et al, 2015, PMID: 26720722; Hata et al, 2019, PMID: 31024045, Alimohamed et al, 2023, PMID: 36270459, Shen C. et al. 2022, PMID: 35284542, Escobar-Lopez L. et al. 2021, PMID 34674813, Pugh TJ, et al. 2014, PMID: 24503780). A variant (S151A) in this gene segregated with disease in 2 additional family members. However, the S151A variant occurs too frequently to explain disease and alternative genetic causes of disease in the family were not ruled out. This gene-disease relationship has been studied in at least one case-control study (Mazzarotto et al, 2020, PMID: 31983221) at the aggregate variant level. There was no enrichment of SGCD found in the DCM cohort compared to controls (p=0.74). In addition, this gene-disease association is supported by multiple animal models (pig, hamster, mouse and drosophila), expression studies, and rescue studies in two mouse models. SGCD has also been implicated in autosomal recessive Limb Girdle Muscular Dystrophy (LGMD) which has been assessed separately (definitive, November 14, 2024). Although this gene-disease assertion is supported by experimental evidence, there is not convincing evidence directly implicating this gene in humans. In summary, there is limited evidence to support this gene-disease relationship. More evidence is needed to support the relationship of SGCD and AD DCM. This classification was approved by the ClinGen Dilated Cardiomyopathy Working Group on 30th March 2025 (SOP Version 10).

autosomal recessive limb-girdle muscular dystrophy type 2FSUPPORTIVE

Inheritance Pattern: AR

Disease ID:MONDO:0011028

Submitter: Orphanet

Clinical Genomic Database (CGD)

Cardiomyopathy, dilated, 1LAR

Manifestation: Cardiovascular; Musculoskeletal

Intervention: Cardiovascular

Rationale: The condition can include severe cardiac manifestations, and knowledge may allow surveillance (eg, with EKG, echocardiogram, and Holter monitoring) and early medical management, which may ameliorate morbidity and mortality; Heart transplantation may be indicated in individuals with severe dilated cardiomyopathy

Comments: Digenic inheritance (with SGCB) has been suggested, but the evidence is unclear

Refs: 8841194; 8776597; 10735275; 9832045; 10069710; 10974018,; 18285821; 19259135Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to SGCD variants in ClinVar

17 Conditions Cataloged
Autosomal recessive limb-girdle muscular dystrophy type 2FTotal: 481
not providedTotal: 152
Dilated cardiomyopathy 1LTotal: 126
Inborn genetic diseasesTotal: 118
not specifiedTotal: 75
SGCD-related disorderTotal: 22
Qualitative or quantitative defects of delta-sarcoglycanTotal: 19
CardiomyopathyTotal: 11

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_000337.6. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
3
clinvar
130
clinvar
3
clinvar
136
missense
1
clinvar
2
clinvar
188
clinvar
7
clinvar
198
nonsense
15
clinvar
4
clinvar
4
clinvar
23
start loss
1
clinvar
1
frameshift
13
clinvar
11
clinvar
1
clinvar
25
splice donor/acceptor (+/-2bp)
1
clinvar
11
clinvar
10
clinvar
22
Total30282071373405

Highest pathogenic variant AF is 0.000022561024

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 31 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_000337.6RefSeqNP_000328.28MANE Select
ENST00000337851.9EnsemblENSP00000338343.48MANE Select
NM_001128209.2RefSeqNP_001121681.17Standard
NM_172244.3RefSeqNP_758447.17Standard

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
sgcdDanio rerio

Structure: ventricular myocardium

Quality: decreased contractility

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Dilated cardiomyopathy (DCM) - Homo sapiens (human)
  • Viral myocarditis - Homo sapiens (human)
  • Arrhythmogenic right ventricular cardiomyopathy (ARVC) - Homo sapiens (human)
  • Hypertrophic cardiomyopathy (HCM) - Homo sapiens (human)
  • Arrhythmogenic Right Ventricular Cardiomyopathy

Biological Process

  • muscle organ development
  • cell death
  • calcium-mediated signaling
  • cellular protein-containing complex localization
  • cardiac muscle tissue development

Cellular Component

  • cytoskeleton
  • plasma membrane
  • dystrophin-associated glycoprotein complex
  • sarcoglycan complex
  • integral component of membrane

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000337851
Coding exons
8
Length
897446
Individuals with no LoFs
124625
Homozygous LoFs
0
Heterozygous LoFs
12
Defined
124637
p
0.0000481
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.1951441510.9550.000007751842
Missense (PolyPhen)4450.6920.86799641
Synonymous-0.1816159.21.030.00000318580
Loss of Function2.08715.90.4399.44e-7187

Population LoF Frequency

PopulationCAFp-valueStatus
African0.000190.00019rare
Latino/Admixed American00.0absent
Ashkenazi Jewish00.0absent
East Asian00.0absent
Finnish0.0000470.000046rare
European (Non-Finnish)0.0000630.000062rare
South Asian0.0000350.000033rare
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Component of the sarcoglycan complex, a subcomplex of the dystrophin-glycoprotein complex which forms a link between the F-actin cytoskeleton and the extracellular matrix.;
Disease
DISEASE: Limb-girdle muscular dystrophy 2F (LGMD2F) [MIM:601287]: An autosomal recessive degenerative myopathy initially affecting the proximal limb girdle musculature. Muscle from patients shows a complete loss of delta-sarcoglycan as well as of the others components of the sarcoglycan complex. {ECO:0000269|PubMed:9832045}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Cardiomyopathy, dilated 1L (CMD1L) [MIM:606685]: A disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Patients are at risk of premature death. {ECO:0000269|PubMed:10974018}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.368

Intolerance Scores

LoFtool
0.276
RVIS EVS
-0.27
RVIS percentile EVS
34.32

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.789

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.