SLC1A2-AS2

SLC1A2 antisense RNA 2, the group of Antisense RNAs

Basic information

Region (hg38): 11:35418962-35483459

Links

ENSG00000255542 ∙ ∙ ∙ HGNC:40535 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SLC1A2-AS2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SLC1A2-AS2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in SLC1A2-AS2

This is a list of pathogenic ClinVar variants found in the SLC1A2-AS2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-35418965-A-C			Likely benign (Oct 24, 2022)
11-35418965-A-G			Likely benign (Nov 29, 2022)
11-35418969-TC-T			Likely benign (Sep 01, 2024)
11-35432377-C-A		not specified	Uncertain significance (Jan 18, 2022)
11-35432478-G-A		not specified	Uncertain significance (Aug 19, 2023)
11-35432498-G-A		not specified	Uncertain significance (Nov 21, 2023)
11-35432508-C-T		not specified	Uncertain significance (Oct 30, 2024)
11-35432513-G-A		not specified	Uncertain significance (Oct 17, 2023)
11-35432519-C-T		not specified	Uncertain significance (May 29, 2024)
11-35432594-C-T		not specified	Uncertain significance (Aug 13, 2021)
11-35432617-A-G			Likely benign (Aug 01, 2022)
11-35432666-C-T		not specified	Uncertain significance (Oct 10, 2023)
11-35432667-G-A		not specified	Uncertain significance (Aug 10, 2024)
11-35432700-C-T		not specified	Uncertain significance (Mar 20, 2024)
11-35432726-A-G		not specified	Uncertain significance (Sep 09, 2024)
11-35432765-C-T		not specified	Uncertain significance (Sep 27, 2021)
11-35432798-G-A		not specified	Uncertain significance (Jan 16, 2024)
11-35432807-C-T		not specified	Uncertain significance (Jul 25, 2023)
11-35432808-G-A		not specified	Uncertain significance (Jun 11, 2021)
11-35434550-C-T		not specified	Uncertain significance (May 10, 2024)
11-35434552-C-T		not specified	Uncertain significance (Sep 13, 2023)
11-35434568-A-C		not specified	Uncertain significance (Nov 10, 2022)
11-35434598-T-C		not specified	Likely benign (Mar 16, 2022)
11-35434692-C-A		not specified	Uncertain significance (Nov 10, 2024)
11-35434706-C-T		not specified	Uncertain significance (Aug 05, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP