SLC35F1

solute carrier family 35 member F1, the group of Solute carrier family 35

Basic information

Region (hg38): 6:117907263-118317676

Previous symbols: [ "C6orf169" ]

Links

ENSG00000196376 ∙ NCBI:222553 ∙ ∙ HGNC:21483 ∙ Uniprot:Q5T1Q4 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SLC35F1 gene.

• Inborn genetic diseases (12 variants)
• not provided (2 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SLC35F1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			13			13
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	13	0	1

Variants in SLC35F1

This is a list of pathogenic ClinVar variants found in the SLC35F1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-117907732-C-G		not specified	Uncertain significance (Oct 14, 2023)
6-117907736-C-G		not specified	Uncertain significance (Apr 25, 2022)
6-117907770-C-T		not specified	Uncertain significance (Oct 26, 2022)
6-117907782-C-G			Uncertain significance (Oct 19, 2023)
6-117907860-G-A		not specified	Uncertain significance (Jun 29, 2022)
6-117907879-G-T		not specified	Uncertain significance (Jan 31, 2023)
6-118050894-G-A		Vascular endothelial growth factor (VEGF) inhibitor response	association (-)
6-118154512-A-G		not specified	Uncertain significance (Nov 07, 2023)
6-118235536-G-C		not specified	Uncertain significance (Feb 22, 2023)
6-118235539-G-A		not specified	Uncertain significance (Jan 11, 2023)
6-118285195-G-A		not specified	Uncertain significance (Jul 28, 2021)
6-118285214-T-G		Nephrotic syndrome	Uncertain significance (Nov 10, 2017)
6-118285232-T-G		not specified	Uncertain significance (Dec 27, 2023)
6-118285240-G-A		not specified	Uncertain significance (Jun 23, 2023)
6-118314136-C-T		not specified	Uncertain significance (Jan 04, 2022)
6-118314137-G-A		not specified	Uncertain significance (Nov 08, 2022)
6-118314152-C-A		not specified	Uncertain significance (Jul 14, 2021)
6-118314168-G-A			Benign (Nov 01, 2022)
6-118314217-G-C		not specified	Uncertain significance (May 03, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
SLC35F1	protein_coding	protein_coding	ENST00000360388	8	410151

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.951	0.0487	125741	0	7	125748	0.0000278

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.78	144	218	0.661	0.0000111	2591
Missense in Polyphen		20	53.74	0.37216		701
Synonymous	1.01	77	89.1	0.864	0.00000464	854
Loss of Function	3.83	3	22.7	0.132	0.00000142	236

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000905	0.0000904
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000546	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.0000352	0.0000352
Middle Eastern	0.0000546	0.0000544
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Putative solute transporter. {ECO:0000305}.

Recessive Scores

• pRec: 0.108

Intolerance Scores

• loftool: 0.266
• rvis_EVS: 0.06
• rvis_percentile_EVS: 58.53

Haploinsufficiency Scores

• pHI: 0.292
• hipred: Y
• hipred_score: 0.716
• ghis: 0.504

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.307

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Slc35f1
• Phenotype: normal phenotype; homeostasis/metabolism phenotype

Gene ontology

• Biological process: transmembrane transport
• Cellular component: integral component of membrane
• Molecular function: transmembrane transporter activity