SLC35F2

solute carrier family 35 member F2, the group of Solute carrier family 35

Basic information

Region (hg38): 11:107790991-107928293

Links

ENSG00000110660 ∙ NCBI:54733 ∙ ∙ HGNC:23615 ∙ Uniprot:Q8IXU6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SLC35F2 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SLC35F2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			13			13
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	13	0	0

Variants in SLC35F2

This is a list of pathogenic ClinVar variants found in the SLC35F2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-107792677-T-C		not specified	Uncertain significance (Feb 05, 2024)
11-107792683-T-C		not specified	Uncertain significance (Apr 08, 2024)
11-107792724-G-A		not specified	Uncertain significance (Sep 26, 2023)
11-107792728-G-A		not specified	Uncertain significance (Jan 16, 2024)
11-107792787-T-C		not specified	Uncertain significance (Oct 25, 2022)
11-107803069-C-T		not specified	Uncertain significance (Aug 22, 2023)
11-107803092-A-G		not specified	Uncertain significance (Dec 07, 2021)
11-107803144-C-T		not specified	Uncertain significance (Oct 12, 2021)
11-107804722-T-A		not specified	Uncertain significance (Aug 03, 2022)
11-107805375-T-C		not specified	Uncertain significance (Oct 25, 2022)
11-107805440-T-A		not specified	Uncertain significance (Feb 13, 2023)
11-107806789-C-T		not specified	Uncertain significance (Dec 16, 2022)
11-107815801-G-A		not specified	Uncertain significance (May 31, 2023)
11-107858752-G-A		not specified	Uncertain significance (Nov 15, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
SLC35F2	protein_coding	protein_coding	ENST00000525815	8	137303

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.000263	0.937	124735	0	57	124792	0.000228

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.423	167	183	0.912	0.00000899	2405
Missense in Polyphen		39	57.256	0.68115		739
Synonymous	-1.33	89	74.4	1.20	0.00000412	752
Loss of Function	1.67	8	15.0	0.535	6.90e-7	210

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000123	0.000123
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000557	0.0000556
Finnish	0.0000937	0.0000928
European (Non-Finnish)	0.000362	0.000353
Middle Eastern	0.0000557	0.0000556
South Asian	0.000343	0.000327
Other	0.000173	0.000165

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Putative solute transporter. {ECO:0000305}.

Recessive Scores

• pRec: 0.105

Intolerance Scores

• loftool: 0.346
• rvis_EVS: 0.22
• rvis_percentile_EVS: 68.13

Haploinsufficiency Scores

• pHI: 0.193
• hipred: N
• hipred_score: 0.230
• ghis: 0.521

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.222

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Slc35f2

Gene ontology

• Biological process: biological_process;transmembrane transport
• Cellular component: cellular_component;integral component of membrane
• Molecular function: molecular_function;transmembrane transporter activity