SLC35F6

solute carrier family 35 member F6, the group of Solute carrier family 35

Basic information

Region (hg38): 2:26764284-26781231

Previous symbols: [ "C2orf18" ]

Links

ENSG00000213699 ∙ NCBI:54978 ∙ OMIM:619667 ∙ HGNC:26055 ∙ Uniprot:Q8N357 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SLC35F6 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SLC35F6 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			33			33
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	33	1	0

Variants in SLC35F6

This is a list of pathogenic ClinVar variants found in the SLC35F6 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-26764388-C-T			Likely benign (Apr 01, 2023)
2-26764414-C-A		not specified	Uncertain significance (Feb 15, 2023)
2-26774252-T-C		not specified	Uncertain significance (Apr 08, 2024)
2-26774273-G-A		not specified	Uncertain significance (Dec 27, 2022)
2-26774283-G-C		not specified	Uncertain significance (Jan 09, 2024)
2-26775068-T-G		not specified	Uncertain significance (Apr 20, 2024)
2-26775071-T-A		not specified	Uncertain significance (Jan 01, 2025)
2-26775107-G-A		not specified	Uncertain significance (Apr 13, 2022)
2-26775536-C-G		not specified	Uncertain significance (Jan 01, 2025)
2-26775554-G-A		not specified	Uncertain significance (Jul 12, 2022)
2-26775598-G-C		not specified	Uncertain significance (Dec 06, 2022)
2-26775599-C-T		not specified	Uncertain significance (Aug 12, 2024)
2-26775613-G-T		not specified	Uncertain significance (May 07, 2024)
2-26775632-T-A		not specified	Uncertain significance (Aug 30, 2021)
2-26775671-T-C		not specified	Uncertain significance (Oct 04, 2024)
2-26776381-T-C		not specified	Uncertain significance (Dec 17, 2023)
2-26776386-A-C		not specified	Uncertain significance (Jan 24, 2025)
2-26776408-C-G		not specified	Uncertain significance (May 26, 2024)
2-26776457-C-G		not specified	Uncertain significance (Nov 11, 2024)
2-26776464-C-T		not specified	Uncertain significance (Feb 24, 2023)
2-26776470-G-T		not specified	Uncertain significance (Sep 01, 2021)
2-26778062-C-T		not specified	Uncertain significance (Sep 09, 2021)
2-26778092-A-G		not specified	Uncertain significance (Dec 18, 2023)
2-26778101-G-A		not specified	Uncertain significance (Dec 20, 2022)
2-26778105-C-T		not specified	Uncertain significance (Dec 18, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
SLC35F6	protein_coding	protein_coding	ENST00000344420	6	16948

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.000115	0.841	125735	0	13	125748	0.0000517

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.985	186	228	0.816	0.0000136	2405
Missense in Polyphen		49	81.44	0.60167		927
Synonymous	1.12	85	99.2	0.857	0.00000618	796
Loss of Function	1.29	8	13.0	0.613	6.45e-7	135

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000148	0.000148
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.0000531	0.0000527
Middle Eastern	0.0000544	0.0000544
South Asian	0.0000654	0.0000653
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Involved in the maintenance of mitochondrial membrane potential in pancreatic ductal adenocarcinoma (PDAC) cells. Promotes pancreatic ductal adenocarcinoma (PDAC) cell growth. May play a role as a nucleotide-sugar transporter. {ECO:0000269|PubMed:19154410}.

Recessive Scores

• pRec: 0.119

Intolerance Scores

• rvis_EVS: -0.34
• rvis_percentile_EVS: 30.37

Haploinsufficiency Scores

• pHI: 0.168
• hipred: Y
• hipred_score: 0.501
• ghis: 0.592

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Slc35f6
• Phenotype: behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); homeostasis/metabolism phenotype

Gene ontology

• Biological process: positive regulation of cell population proliferation;transmembrane transport;negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
• Cellular component: nucleoplasm;mitochondrion;lysosomal membrane;cytosol;integral component of membrane;intracellular membrane-bounded organelle;extracellular exosome
• Molecular function: protein binding;transmembrane transporter activity