SLC9A3R1-AS1

SLC9A3R1 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 17:74747018-74748912

Links

ENSG00000266036 ∙ NCBI:105371893 ∙ ∙ HGNC:55322 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SLC9A3R1-AS1 gene.

• not provided (9 variants)
• NHERF1-related condition (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SLC9A3R1-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			3	4	3	10
Total	0	0	3	4	3

Variants in SLC9A3R1-AS1

This is a list of pathogenic ClinVar variants found in the SLC9A3R1-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
17-74748373-T-C			Benign (Oct 16, 2018)
17-74748444-A-C			Benign (Oct 16, 2018)
17-74748473-G-A			Likely benign (Oct 07, 2019)
17-74748659-G-C			Benign (Oct 16, 2018)
17-74748731-C-T			Likely benign (May 25, 2021)
17-74748772-G-A			Likely benign (Sep 23, 2019)
17-74748804-C-A			Likely benign (Jul 17, 2019)
17-74748851-G-A			Uncertain significance (Jan 15, 2024)
17-74748854-C-T			Uncertain significance (Apr 05, 2022)
17-74748872-C-A		NHERF1-related disorder	Uncertain significance (Jan 10, 2023)
17-74748879-G-T			Uncertain significance (-)
17-74748890-G-T			Uncertain significance (Apr 08, 2021)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP