GeneBe

SLC9A9-AS2

SLC9A9 antisense RNA 2, the group of Antisense RNAs

Basic information

Region (hg38): 3:143381338-143382161

Links

ENSG00000244493 ∙ ∙ ∙ HGNC:40929 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SLC9A9-AS2 gene.

  • Autism, susceptibility to, 16 (1 variants)
  • not specified (1 variants)
  • not provided (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SLC9A9-AS2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type Pathogenic Likely pathogenic VUS Likely benign Benign Sum
synonymous
0
missense
0
nonsense
0
start loss
0
frameshift
0
inframe indel
0
splice donor/acceptor (+/-2bp)
0
splice region
0
non coding
2
clinvar
 2
Total 0 0 0 2 0

Variants in SLC9A9-AS2

This is a list of pathogenic ClinVar variants found in the SLC9A9-AS2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position Type Phenotype Significance ClinVar
3-143382066-T-G not specified Uncertain significance (Jun 16, 2024)3320302
3-143382098-C-T not specified • Autism, susceptibility to, 16 Likely benign (Aug 01, 2024)252794
3-143382102-G-T not specified Uncertain significance (Mar 01, 2024)3165733
3-143382106-A-G not specified Uncertain significance (Dec 16, 2023)3165732
3-143382108-G-A Likely benign (Mar 29, 2018)746826

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP