SMANTIS

SMARCA4 interacting SWI/SNF chromatin remodeling complex scaffold lncRNA, the group of Long non-coding RNAs with non-systematic symbols

Basic information

Region (hg38): 2:69789541-69804663

Links

ENSG00000288869 ∙ NCBI:107985770 ∙ ∙ HGNC:54417 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SMANTIS gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SMANTIS gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in SMANTIS

This is a list of pathogenic ClinVar variants found in the SMANTIS region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-69804540-T-A		not specified	Uncertain significance (Jul 14, 2024)
2-69804559-G-A		not specified	Uncertain significance (Sep 27, 2024)
2-69804572-G-A		not specified	Uncertain significance (Oct 12, 2023)
2-69804614-G-C		not specified	Likely benign (Dec 21, 2022)
2-69804622-G-A		not specified	Uncertain significance (Jul 16, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP