SNHG10

small nucleolar RNA host gene 10, the group of Small nucleolar RNA non-coding host genes

Basic information

Region (hg38): 14:95521937-95534925

Previous symbols: [ "C14orf62" ]

Links

ENSG00000247092 ∙ NCBI:283596 ∙ ∙ HGNC:27510 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SNHG10 gene.

• not provided (3 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SNHG10 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding				2	1	3
Total	0	0	0	2	1

Variants in SNHG10

This is a list of pathogenic ClinVar variants found in the SNHG10 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
14-95534813-T-A			Likely benign (Jun 16, 2018)
14-95534834-G-A			Benign (Jul 07, 2018)
14-95534887-A-C			Likely benign (Jul 15, 2018)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

Essentials

• gene_indispensability_pred: E
• gene_indispensability_score: 0.606

Mouse Genome Informatics

• Gene name: Snhg10