SNHG19

small nucleolar RNA host gene 19, the group of Small nucleolar RNA non-coding host genes

Basic information

Region (hg38): 16:2151103-2155672

Links

ENSG00000260260 ∙ NCBI:100507303 ∙ ∙ HGNC:49574 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SNHG19 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SNHG19 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in SNHG19

This is a list of pathogenic ClinVar variants found in the SNHG19 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
16-2151575-G-T		not specified	Uncertain significance (Nov 24, 2024)
16-2151583-C-A		not specified	Uncertain significance (Jul 05, 2023)
16-2151584-G-A		not specified	Uncertain significance (Jan 27, 2025)
16-2151593-G-A		not specified	Likely benign (Nov 25, 2024)
16-2151596-A-C		not specified	Uncertain significance (Mar 20, 2023)
16-2151702-A-G		not specified	Uncertain significance (Apr 20, 2023)
16-2151726-G-A		not specified	Uncertain significance (Feb 21, 2024)
16-2151731-G-A		not specified	Uncertain significance (Jun 12, 2025)
16-2151867-C-T		not specified	Uncertain significance (May 29, 2025)
16-2151873-G-A		not specified	Uncertain significance (May 06, 2024)
16-2151892-C-T		not specified	Uncertain significance (Oct 29, 2024)
16-2152847-G-A		not specified	Uncertain significance (May 18, 2025)
16-2152855-C-A		not specified	Uncertain significance (Oct 16, 2023)
16-2152859-G-A		not specified	Uncertain significance (Sep 16, 2021)
16-2152860-T-C		not specified	Uncertain significance (Apr 20, 2024)
16-2152863-C-T		not specified	Likely benign (Oct 13, 2023)
16-2152883-A-G		not specified	Uncertain significance (Dec 16, 2024)
16-2153007-C-T		not specified	Uncertain significance (May 17, 2025)
16-2153020-G-A		not specified	Uncertain significance (May 26, 2025)
16-2153028-G-A		not specified	Uncertain significance (May 14, 2025)
16-2153035-A-T		not specified	Uncertain significance (Mar 26, 2025)
16-2153037-C-G		not specified	Uncertain significance (Jul 26, 2024)
16-2153176-G-A		not specified	Uncertain significance (Dec 28, 2022)
16-2153181-G-C		not specified	Uncertain significance (Apr 07, 2023)
16-2153202-G-C		not specified	Uncertain significance (Mar 05, 2025)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP