SNHG21

small nucleolar RNA host gene 21, the group of Small nucleolar RNA non-coding host genes

Basic information

Region (hg38): 15:82750512-82796682

Links

ENSG00000250988 ∙ NCBI:100505616 ∙ ∙ HGNC:50284 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SNHG21 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SNHG21 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in SNHG21

This is a list of pathogenic ClinVar variants found in the SNHG21 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-82759374-T-C		not specified	Uncertain significance (Apr 20, 2023)
15-82759425-A-G		not specified	Uncertain significance (Jan 23, 2025)
15-82759466-A-G		not specified	Uncertain significance (Jun 11, 2024)
15-82759503-T-C		not specified	Uncertain significance (Mar 04, 2025)
15-82759530-C-T		not specified	Uncertain significance (Feb 06, 2023)
15-82759532-A-G		not specified	Uncertain significance (Oct 03, 2024)
15-82759542-G-T		not specified	Uncertain significance (Dec 15, 2023)
15-82759587-A-G		not specified	Uncertain significance (Jun 23, 2023)
15-82759594-C-G		not specified	Uncertain significance (Feb 13, 2025)
15-82759598-T-C		not specified	Uncertain significance (Jul 22, 2022)
15-82762174-T-C		not specified	Uncertain significance (Aug 14, 2024)
15-82762190-C-G		not specified	Uncertain significance (Mar 22, 2023)
15-82762273-A-C		not specified	Uncertain significance (Jan 08, 2024)
15-82765182-C-A		not specified	Uncertain significance (Mar 25, 2024)
15-82765182-C-G		not specified	Uncertain significance (Nov 10, 2024)
15-82765182-C-T		not specified	Uncertain significance (Feb 07, 2025)
15-82765223-C-T		not specified	Uncertain significance (Jun 27, 2023)
15-82765232-G-A		not specified	Uncertain significance (Mar 06, 2023)
15-82765271-G-A		not specified	Uncertain significance (Feb 07, 2025)
15-82765286-C-T		not specified	Likely benign (Mar 04, 2024)
15-82765288-A-C		not specified	Uncertain significance (Nov 08, 2024)
15-82765900-A-G		not specified	Likely benign (Jul 06, 2021)
15-82765927-C-T		not specified	Uncertain significance (Oct 30, 2023)
15-82765931-C-T		not specified	Uncertain significance (Dec 15, 2023)
15-82765936-G-A		not specified	Uncertain significance (Feb 13, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP