SNHG31

small nucleolar RNA host gene 31, the group of Small nucleolar RNA non-coding host genes

Basic information

Links

ENSG00000229267

∙ NCBI:101928103 ∙ ∙ HGNC:54196 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SNHG31 gene.

not provided (62 variants)
Congenital ichthyosis of skin (56 variants)
Inborn genetic diseases (19 variants)
Autosomal recessive congenital ichthyosis 4B (16 variants)
Autosomal recessive congenital ichthyosis 4A (7 variants)
not specified (5 variants)
Congenital ichthyosiform erythroderma (4 variants)
Lamellar ichthyosis (3 variants)
ABCA12-related condition (2 variants)
Autosomal recessive congenital ichthyosis 4A;Autosomal recessive congenital ichthyosis 4B (2 variants)
Autosomal recessive congenital ichthyosis 4B;Autosomal recessive congenital ichthyosis 4A (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SNHG31 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region ? Intron variants in splice region, excluding donor/acceptor (+/-2bp)						0
non coding ? UTR, intron and other, non coding variants	9 clinvar	13 clinvar	74 clinvar	23 clinvar	20 clinvar	139
Total	9	13	74	23	20

Highest pathogenic variant AF is 0.0000132

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP