SNHG32

small nucleolar RNA host gene 32, the group of Small nucleolar RNA non-coding host genes

Basic information

Region (hg38): 6:31822094-31839766

Previous symbols: [ "C6orf48" ]

Links

ENSG00000204387 ∙ NCBI:50854 ∙ OMIM:605447 ∙ HGNC:19078 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SNHG32 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SNHG32 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in SNHG32

This is a list of pathogenic ClinVar variants found in the SNHG32 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-31826815-C-T		Chronic obstructive pulmonary disease	association (Aug 04, 2019)
6-31827773-C-T		Chronic obstructive pulmonary disease	association (Aug 04, 2019)
6-31828143-A-G		not specified	Uncertain significance (Mar 13, 2023)
6-31828417-A-G		not specified	Uncertain significance (Apr 08, 2022)
6-31829495-C-G		not specified	Uncertain significance (Dec 06, 2021)
6-31829604-G-A		not specified	Uncertain significance (Dec 21, 2022)
6-31829679-G-A		not specified	Uncertain significance (Feb 28, 2024)
6-31829836-G-A		not specified	Uncertain significance (Nov 09, 2023)
6-31829850-G-A		not specified	Uncertain significance (Jul 31, 2023)
6-31829851-G-A		not specified	Uncertain significance (Dec 05, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
SNHG32	protein_coding	protein_coding	ENST00000375640	2	5157

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0236	0.561	125726	0	10	125736	0.0000398

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.523	46	37.0	1.24	0.00000157	485
Missense in Polyphen		2	3.2524	0.61492		35
Synonymous	-0.641	19	15.8	1.21	7.65e-7	145
Loss of Function	-0.0688	2	1.90	1.05	8.00e-8	23

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000460	0.000460
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00000881	0.00000879
Middle Eastern	0.00	0.00
South Asian	0.0000337	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Intolerance Scores

• loftool: 0.429
• rvis_EVS: 0.17
• rvis_percentile_EVS: 65.33

Haploinsufficiency Scores

• pHI: 0.0471
• hipred: N
• hipred_score: 0.146
• ghis: 0.521

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: E

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium