SNHG7

small nucleolar RNA host gene 7, the group of Small nucleolar RNA non-coding host genes

Basic information

Region (hg38): 9:136721366-136728961

Links

ENSG00000233016 ∙ NCBI:84973 ∙ ∙ HGNC:28254 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SNHG7 gene.

• Inborn genetic diseases (6 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SNHG7 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			6			6
Total	0	0	6	0	0

Variants in SNHG7

This is a list of pathogenic ClinVar variants found in the SNHG7 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
9-136721957-G-A		not specified	Likely benign (Jan 07, 2022)
9-136721986-G-A		not specified	Uncertain significance (Jun 24, 2022)
9-136721987-G-C		not specified	Uncertain significance (Sep 16, 2021)
9-136722008-T-C		not specified	Uncertain significance (Mar 25, 2024)
9-136722012-T-C		not specified	Likely benign (Jul 20, 2022)
9-136722018-C-T		not specified	Uncertain significance (Oct 26, 2022)
9-136722200-C-T		not specified	Uncertain significance (Dec 01, 2022)
9-136722201-G-A		not specified	Uncertain significance (Mar 29, 2024)
9-136722204-C-T		not specified	Uncertain significance (May 08, 2024)
9-136722212-G-A		not specified	Uncertain significance (Dec 14, 2021)
9-136722221-C-T		not specified	Uncertain significance (Nov 25, 2024)
9-136722243-A-G		not specified	Uncertain significance (Aug 09, 2021)
9-136722267-A-C		not specified	Uncertain significance (Dec 22, 2023)
9-136722267-A-G		not specified	Uncertain significance (Dec 22, 2023)
9-136722275-C-T		not specified	Uncertain significance (May 18, 2022)
9-136722984-C-T		not specified	Uncertain significance (Oct 12, 2021)
9-136722990-C-T		not specified	Uncertain significance (Oct 18, 2021)
9-136723031-A-G		not specified	Uncertain significance (Nov 09, 2023)
9-136723041-G-A		not specified	Uncertain significance (Oct 08, 2024)
9-136723067-G-A		not specified	Uncertain significance (Sep 08, 2024)
9-136723119-A-G		not specified	Uncertain significance (Nov 14, 2024)
9-136723121-A-G		not specified	Uncertain significance (Aug 19, 2024)
9-136723131-C-T		not specified	Uncertain significance (Apr 24, 2024)
9-136723175-G-A		not specified	Uncertain significance (Dec 06, 2024)
9-136723176-G-A		not specified	Uncertain significance (Jan 20, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

Essentials

• gene_indispensability_pred: E
• gene_indispensability_score: 0.539

Mouse Genome Informatics

• Gene name: Snhg7