SORBS2

sorbin and SH3 domain containing 2

Basic information

Region (hg38): 4:185585443-185956652

Links

ENSG00000154556 ∙ NCBI:8470 ∙ OMIM:616349 ∙ HGNC:24098 ∙ Uniprot:O94875 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SORBS2 gene.

• Inborn genetic diseases (55 variants)
• not provided (5 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SORBS2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					3	3
missense			50	5	1	56
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region					1	1
non coding						0
Total	0	0	50	5	4

Variants in SORBS2

This is a list of pathogenic ClinVar variants found in the SORBS2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
4-185587654-G-T		not specified	Uncertain significance (Oct 26, 2021)
4-185587666-G-T		not specified	Uncertain significance (Sep 27, 2021)
4-185589691-C-T		not specified	Uncertain significance (Jan 26, 2022)
4-185593893-C-G		not specified	Uncertain significance (May 17, 2023)
4-185593896-C-A		not specified	Uncertain significance (Mar 31, 2023)
4-185611819-G-C		not specified	Uncertain significance (Aug 12, 2021)
4-185611827-G-T		not specified	Uncertain significance (Jun 03, 2022)
4-185611836-G-A		not specified	Uncertain significance (Aug 08, 2023)
4-185611875-C-T		not specified	Likely benign (Apr 19, 2023)
4-185611965-G-T		not specified	Uncertain significance (Dec 03, 2021)
4-185615050-C-T		not specified	Uncertain significance (Jun 13, 2022)
4-185615076-C-T		not specified	Uncertain significance (Jul 09, 2021)
4-185615094-T-A		not specified	Uncertain significance (May 30, 2023)
4-185620086-T-C		not specified	Uncertain significance (Feb 16, 2023)
4-185620095-G-C		not specified	Uncertain significance (Jan 03, 2024)
4-185620107-C-A		not specified	Uncertain significance (Apr 08, 2022)
4-185620148-C-T		not specified	Likely benign (May 09, 2022)
4-185622955-T-C		not specified	Likely benign (Mar 23, 2022)
4-185622965-C-T		not specified	Uncertain significance (Mar 17, 2023)
4-185622970-T-C		not specified	Uncertain significance (Feb 28, 2024)
4-185623000-C-A		not specified	Uncertain significance (May 05, 2023)
4-185623075-C-A		not specified	Uncertain significance (Jan 04, 2022)
4-185623087-G-A		not specified	Uncertain significance (May 09, 2022)
4-185623097-A-G		not specified	Uncertain significance (Dec 12, 2023)
4-185623112-G-T		not specified	Uncertain significance (Apr 19, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
SORBS2	protein_coding	protein_coding	ENST00000355634	21	371209

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0359	0.964	125725	0	23	125748	0.0000915

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.108	687	695	0.989	0.0000427	7898
Missense in Polyphen		278	313.15	0.88776		3653
Synonymous	-0.799	291	274	1.06	0.0000191	2303
Loss of Function	5.08	14	54.5	0.257	0.00000297	669

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.000139	0.000139
European (Non-Finnish)	0.000152	0.000149
Middle Eastern	0.0000544	0.0000544
South Asian	0.000104	0.0000653
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Adapter protein that plays a role in the assembling of signaling complexes, being a link between ABL kinases and actin cytoskeleton. Can form complex with ABL1 and CBL, thus promoting ubiquitination and degradation of ABL1 or with AKT1 and PAK1, thus mediating AKT1-mediated activation of PAK1. May play a role in the regulation of pancreatic cell adhesion, possibly by acting on WASF1 phosphorylation, enhancing phosphorylation by ABL1, as well as dephosphorylation by PTPN12 (PubMed:18559503). Isoform 6 increases water and sodium absorption in the intestine and gall- bladder. {ECO:0000269|PubMed:12475393, ECO:0000269|PubMed:18559503, ECO:0000269|PubMed:9211900}.

Recessive Scores

• pRec: 0.137

Intolerance Scores

• loftool: 0.717
• rvis_EVS: -0.52
• rvis_percentile_EVS: 20.95

Haploinsufficiency Scores

• pHI: 0.408
• hipred: Y
• hipred_score: 0.637
• ghis: 0.515

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.912

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Sorbs2
• Phenotype: homeostasis/metabolism phenotype; behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan); vision/eye phenotype; hematopoietic system phenotype; cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan); mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span); normal phenotype; pigmentation phenotype

Gene ontology

• Biological process: actin filament organization;Notch signaling pathway;biological_process;cell growth involved in cardiac muscle cell development
• Cellular component: nucleus;nucleoplasm;plasma membrane;focal adhesion;actin cytoskeleton;apical plasma membrane;Z disc;lamellipodium;perinuclear region of cytoplasm
• Molecular function: RNA binding;structural constituent of cytoskeleton;protein binding;cytoskeletal adaptor activity;structural constituent of muscle