SPEN-AS1

SPEN antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 1:15770783-15848147

Links

ENSG00000179743 ∙ NCBI:729614 ∙ ∙ HGNC:55937 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SPEN-AS1 gene.

• not provided (2 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SPEN-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			1	1		2
Total	0	0	1	1	0

Variants in SPEN-AS1

This is a list of pathogenic ClinVar variants found in the SPEN-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-15774636-G-A		not specified	Uncertain significance (May 20, 2024)
1-15774657-C-T		not specified	Uncertain significance (Apr 08, 2024)
1-15774723-G-A		not specified	Uncertain significance (May 15, 2024)
1-15774726-C-T		not specified	Uncertain significance (Jun 16, 2023)
1-15774727-G-A		not specified	Uncertain significance (Jun 03, 2022)
1-15774807-G-A		not specified	Uncertain significance (Dec 15, 2023)
1-15774828-G-T			Benign (Dec 14, 2017)
1-15774874-G-C		not specified	Uncertain significance (Apr 07, 2023)
1-15774908-G-A			Benign (Dec 14, 2017)
1-15774922-A-C		not specified	Uncertain significance (Nov 15, 2023)
1-15774945-G-A		not specified	Uncertain significance (Mar 21, 2024)
1-15774946-C-T		not specified	Uncertain significance (Jun 30, 2022)
1-15777183-G-A		not specified	Uncertain significance (May 30, 2024)
1-15777204-C-T		not specified	Uncertain significance (Jun 11, 2021)
1-15777216-C-T		not specified	Uncertain significance (Jan 19, 2022)
1-15807406-C-T		not specified	Uncertain significance (Nov 21, 2023)
1-15807471-C-T		not specified	Uncertain significance (Aug 08, 2023)
1-15807479-T-C			Benign (Jul 21, 2018)
1-15807490-C-G		not specified	Uncertain significance (Jun 02, 2023)
1-15807492-T-C			Benign (Dec 31, 2019)
1-15807507-T-C		not specified	Uncertain significance (May 30, 2023)
1-15807510-C-T		not specified	Uncertain significance (Sep 15, 2021)
1-15807511-G-A		not specified	Uncertain significance (May 13, 2022)
1-15807516-T-A		not specified	Uncertain significance (Oct 06, 2021)
1-15807534-T-C		not specified	Uncertain significance (Sep 14, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP