STK32C

serine/threonine kinase 32C, the group of AGC family kinases

Basic information

Region (hg38): 10:132207492-132331847

Links

ENSG00000165752 ∙ NCBI:282974 ∙ ∙ HGNC:21332 ∙ Uniprot:Q86UX6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the STK32C gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the STK32C gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					4	4
missense			27	3	1	31
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	27	3	5

Variants in STK32C

This is a list of pathogenic ClinVar variants found in the STK32C region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
10-132208016-G-A			Benign (Dec 31, 2019)
10-132208041-C-A		not specified	Uncertain significance (Apr 11, 2023)
10-132208050-G-A		not specified	Uncertain significance (Jan 12, 2024)
10-132208060-A-G		not specified	Likely benign (Apr 20, 2024)
10-132208062-C-T		not specified	Likely benign (May 13, 2022)
10-132208063-G-A		not specified	Uncertain significance (May 30, 2024)
10-132208071-T-C			Benign (Apr 05, 2018)
10-132208083-G-T		not specified	Uncertain significance (Mar 07, 2024)
10-132208086-T-C		not specified	Uncertain significance (Oct 02, 2023)
10-132208125-C-T		not specified	Uncertain significance (Nov 14, 2023)
10-132208130-G-C			Benign (Dec 31, 2019)
10-132208132-G-A		not specified	Uncertain significance (Mar 14, 2023)
10-132222766-G-C		not specified	Uncertain significance (Jun 13, 2022)
10-132222875-C-T		not specified	Uncertain significance (Feb 28, 2023)
10-132222886-C-A		not specified	Uncertain significance (Oct 06, 2022)
10-132222895-C-G		not specified	Uncertain significance (Oct 27, 2022)
10-132222910-A-G		not specified	Uncertain significance (Sep 29, 2023)
10-132222928-G-A		not specified	Uncertain significance (Nov 29, 2024)
10-132224457-C-T		not specified	Uncertain significance (May 30, 2023)
10-132224463-C-T		not specified	Uncertain significance (May 20, 2024)
10-132226802-T-G		not specified	Uncertain significance (May 30, 2023)
10-132226815-G-A			Benign (Jun 26, 2018)
10-132226865-T-A		not specified	Uncertain significance (Dec 18, 2023)
10-132226920-T-G			Benign (Jul 31, 2018)
10-132227995-A-T		not specified	Uncertain significance (Oct 26, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
STK32C	protein_coding	protein_coding	ENST00000298630	12	124356

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.204	0.796	125731	0	11	125742	0.0000437

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.11	179	278	0.644	0.0000179	3159
Missense in Polyphen		39	92.875	0.41992		963
Synonymous	-0.984	138	124	1.11	0.00000910	930
Loss of Function	3.45	6	24.4	0.246	0.00000122	258

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000292	0.0000292
Ashkenazi Jewish	0.000103	0.0000992
East Asian	0.00	0.00
Finnish	0.000187	0.000185
European (Non-Finnish)	0.0000180	0.0000176
Middle Eastern	0.00	0.00
South Asian	0.0000327	0.0000327
Other	0.000327	0.000326

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.110

Intolerance Scores

• loftool: 0.617
• rvis_EVS: -0.36
• rvis_percentile_EVS: 29.31

Haploinsufficiency Scores

• pHI: 0.0823
• hipred: Y
• hipred_score: 0.685
• ghis: 0.533

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.749

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Stk32c

Gene ontology

• Biological process: peptidyl-serine phosphorylation;intracellular signal transduction
• Molecular function: protein serine/threonine kinase activity;ATP binding;metal ion binding